View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0684_low_121 (Length: 219)

Name: NF0684_low_121
Description: NF0684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0684_low_121
NF0684_low_121
[»] chr2 (4 HSPs)
chr2 (1-154)||(23176346-23176499)
chr2 (1-154)||(23587603-23587756)
chr2 (4-144)||(23182554-23182696)
chr2 (4-144)||(23593811-23593953)
[»] chr6 (4 HSPs)
chr6 (38-124)||(15589217-15589304)
chr6 (39-78)||(15597471-15597510)
chr6 (38-78)||(15601398-15601438)
chr6 (38-78)||(15610983-15611023)


Alignment Details
Target: chr2 (Bit Score: 146; Significance: 4e-77; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 23176346 - 23176499
Alignment:
Q  1 atataaaaacatattaccttcaacattccttgtagtaacaaataggaaaagaaatagaaacattgcataaataaactttagaattgcagccatgtttttc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  23176346 atataaaaacatattaccttcaacattccttgtagtaacaaataggaaaagaaatagaaacattgcataaataaactttagaattgcatccatgtttttc 23176445  T
Q  101 cctctttataggtaacaaatagaataaaattgtatcactttatagtgtggaaac 154  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  23176446 cctctttataggtaacaaatacaataaaattgtatcactttatagtgtggaaac 23176499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 23587603 - 23587756
Alignment:
Q  1 atataaaaacatattaccttcaacattccttgtagtaacaaataggaaaagaaatagaaacattgcataaataaactttagaattgcagccatgtttttc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  23587603 atataaaaacatattaccttcaacattccttgtagtaacaaataggaaaagaaatagaaacattgcataaataaactttagaattgcatccatgtttttc 23587702  T
Q  101 cctctttataggtaacaaatagaataaaattgtatcactttatagtgtggaaac 154  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  23587703 cctctttataggtaacaaatacaataaaattgtatcactttatagtgtggaaac 23587756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 144
Target Start/End: Original strand, 23182554 - 23182696
Alignment:
Q  4 taaaaacatattaccttcaacattccttgtagtaacaaataggaaaagaaatagaaacattgcataaataaa---ctttagaattgcagccatgtttttc 100  Q
    |||||| | |||||||||||||||  |||||| || |||||||| || ||||||||||| ||||| ||||||   |||||||||||||| ||||||||||    
T  23182554 taaaaatagattaccttcaacatttgttgtagcaagaaataggacaataaatagaaacactgcattaataaacttctttagaattgcagtcatgtttttc 23182653  T
Q  101 cctctttataggtaacaaatagaataaaattgtatcactttata 144  Q
    || | || || ||||||||||||| ||||||  |||||||||||    
T  23182654 ccaccttgtatgtaacaaatagaa-aaaatttaatcactttata 23182696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 144
Target Start/End: Original strand, 23593811 - 23593953
Alignment:
Q  4 taaaaacatattaccttcaacattccttgtagtaacaaataggaaaagaaatagaaacattgcataaataaa---ctttagaattgcagccatgtttttc 100  Q
    |||||| | |||||||||||||||  |||||| || |||||||| || ||||||||||| ||||| ||||||   |||||||||||||| ||||||||||    
T  23593811 taaaaatagattaccttcaacatttgttgtagcaagaaataggacaataaatagaaacactgcattaataaacttctttagaattgcagtcatgtttttc 23593910  T
Q  101 cctctttataggtaacaaatagaataaaattgtatcactttata 144  Q
    || | || || ||||||||||||| ||||||  |||||||||||    
T  23593911 ccaccttgtatgtaacaaatagaa-aaaatttaatcactttata 23593953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 124
Target Start/End: Original strand, 15589217 - 15589304
Alignment:
Q  38 acaaataggaaaagaaatagaaacattgcataaataaactttagaattgcagccatgt-ttttccctctttataggtaacaaatagaa 124  Q
    ||||||||||||| ||||||||||||||  |||||||| || |  ||||||||||| | ||| |||||||| || |||||| ||||||    
T  15589217 acaaataggaaaataaatagaaacattgtgtaaataaatttaatgattgcagccatatatttcccctctttttatgtaacagatagaa 15589304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 78
Target Start/End: Original strand, 15597471 - 15597510
Alignment:
Q  39 caaataggaaaagaaatagaaacattgcataaataaactt 78  Q
    |||||||||||| |||||||||||||| ||||||||||||    
T  15597471 caaataggaaaataaatagaaacattgtataaataaactt 15597510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 15601398 - 15601438
Alignment:
Q  38 acaaataggaaaagaaatagaaacattgcataaataaactt 78  Q
    ||||||||||||| |||||||||||||| |||||| |||||    
T  15601398 acaaataggaaaataaatagaaacattgtataaatgaactt 15601438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 15610983 - 15611023
Alignment:
Q  38 acaaataggaaaagaaatagaaacattgcataaataaactt 78  Q
    |||||||| |||| |||||||||||||| ||||||||||||    
T  15610983 acaaatagtaaaataaatagaaacattgtataaataaactt 15611023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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