View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0684_low_15 (Length: 475)
Name: NF0684_low_15
Description: NF0684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0684_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 88 - 385
Target Start/End: Original strand, 9107486 - 9107779
Alignment:
| Q |
88 |
gttttcatgaattacaggttattgtgaagatggtagaatggtcaacaatccttgcggctgaccagtggtggttatccatgtgatgctaaaaacatgttct |
187 |
Q |
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| T |
9107486 |
gttttcatgaattacaggttattgtgaagatggtagaatggtcaacaatccttgcggctgaccagtggtggttatccatgtgatgctaaaaacatgttct |
9107585 |
T |
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| Q |
188 |
cattttaatttggttatttgcacagagcatattgctctgcctgaagtatctcaatattgcattagctctttataaattcaacaatttctctgttagcttc |
287 |
Q |
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| T |
9107586 |
catttaaatttggttatttgcacagagcatattgctctgcctgaagtatttcaatattgcattagctctttataaattcaacaatttctctgttagcttc |
9107685 |
T |
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| Q |
288 |
ttgttatttactgagaaactagttagttcccatatcgtggatagttcatgcatgcaatctcagaaaaaattgggagaagcaaatagtaaacaagattt |
385 |
Q |
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| T |
9107686 |
tcgttatttactgagaaac----tagttcccatatcgtggatagttcatgcatgcaatctcagaaaaaattgggagaagcaaatagtaaacaagattt |
9107779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 9107204 - 9107298
Alignment:
| Q |
1 |
tcaacaaaaatatgtcacactaatgcaaggtattttgaagtgttatgtaaacaatattattatgagactcagtatcatgattggttagttttcat |
95 |
Q |
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| T |
9107204 |
tcaacaaaaatatgtcacactaatgcaaggtattttgaagtgttatgtaaacaatattattatgagactcagtatcatgattggttagttttcat |
9107298 |
T |
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