View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0684_low_16 (Length: 470)
Name: NF0684_low_16
Description: NF0684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0684_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 94 - 458
Target Start/End: Original strand, 462571 - 462936
Alignment:
| Q |
94 |
tatagttgaaaaatgataaaattgttttgaatttatggatcatactctattacttaccatttgattttttggattaatattctttgtttccgtaaagtca |
193 |
Q |
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| T |
462571 |
tatagttgaaaaatgataaaattgttttgaatttatggatcatactctattacttaccatttgattttttggattaatattctttgtttccgtaaagtca |
462670 |
T |
|
| Q |
194 |
taatggtgaatttggtattctctatatatgtatacgaacaatctatgtatgcagatgcagtctgccaagttgattggccaaaagatcagttgctagatgt |
293 |
Q |
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| T |
462671 |
taatggtgaatttggtattctctatatatgtatacgaacaatctatgtatgcagatgcagtctgccaagttgattggccaaaagatcagttgctagatgt |
462770 |
T |
|
| Q |
294 |
ttgacgactcgactctgatgatgagagcatacaatggttaatcaagggagaaatcatgagttattaagcgggaaatctaaacctgcgatgaac-ttaggt |
392 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
462771 |
ttgacgactcgactctgatgatgagagcatacaatggttaatcaagggagaaatcatgagttattaagcgggaaatctaaacctgcgatgaactttaggt |
462870 |
T |
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| Q |
393 |
tataaagctgtcaatatcatcaatcgtcgtaggaagttttgaatcggaaggtgatctcttcatatt |
458 |
Q |
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| T |
462871 |
tataaagctgtcaatatcatcaatcgtcgtaggaagttttgcatcggaaggtgatctcttcatatt |
462936 |
T |
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