View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0684_low_17 (Length: 456)
Name: NF0684_low_17
Description: NF0684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0684_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 115 - 427
Target Start/End: Original strand, 2018177 - 2018487
Alignment:
| Q |
115 |
attggctttgattgaattgttctttttctggtgcttcagatattttggatttgatgggtttgatggattcgaaggattgggtcgctaatcagggtactga |
214 |
Q |
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| T |
2018177 |
attggctttgattggaatgttctttttctggtgcttcagatactttggatttgatgg---------attcgaaggattgggtcgctaatcagggtactga |
2018267 |
T |
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| Q |
215 |
acccacaactga---------ttggagaacccaactgcaacctgatcaacgccaaagaattgtcaacaaaatgtaagattcagtgtcaatactgtatcac |
305 |
Q |
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| T |
2018268 |
acccactactgacacagttgattggagaactcaactgcaacctgatcaacgccaaagaattgtcaataaaatgtaagattcagtatcaatattgtatca- |
2018366 |
T |
|
| Q |
306 |
tgaggttatttaaataatatttttacctgtcgttgcatttcaaaagaaaattaagaaatgaataaccaatccataacttgacaaccttcattgaagattt |
405 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
2018367 |
-gaggttatttaaatagtatttttacctgtcgttgcatttcaaaagaaaattaagaaatgaataaccgatccatatcttgacaaccttcattgaagattt |
2018465 |
T |
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| Q |
406 |
cttttgtttgttctatagatgc |
427 |
Q |
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| T |
2018466 |
cttttgtttgttctatagatgc |
2018487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 83 - 427
Target Start/End: Original strand, 2020705 - 2021046
Alignment:
| Q |
83 |
catatatatgtccctttcatgtttcttt-cagaattggcttt-gattgaattgttctttttctggtgcttcagatattttggatttgatgggtttgatgg |
180 |
Q |
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| T |
2020705 |
catatatatgtccctttcatgtttcttttcagaattggcttttgattggattgttctatttttggtgtttcagatactaaggatttaatgg--------- |
2020795 |
T |
|
| Q |
181 |
attcgaaggattgggtcgctaatcagggtactgaaccca---------caactgattggagaacccaactgcaacctgatcaacgccaaagaattgtcaa |
271 |
Q |
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|||| | |||||||||||||||||||||||||| ||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2020796 |
attccagtaattgggtcgctaatcagggtactgaatccattgccgacacaattgattggagaactcaactgcaacctgatcaacgccaaagaattgtcaa |
2020895 |
T |
|
| Q |
272 |
caaaatgtaagattcagtgtcaatactgtatcactgaggttatttaaataatatttttacctgtcgttgcatttcaaaagaaaattaagaaatgaataac |
371 |
Q |
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| T |
2020896 |
taatatgtaagatttggtgtcaatactgtgtca--gaggttatttaaatagtatttttacatgt---tgcatttcaaaagaaaattaagaaatgaataat |
2020990 |
T |
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| Q |
372 |
caatccataacttgacaaccttcattgaagatttcttttgtttgttctatagatgc |
427 |
Q |
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| T |
2020991 |
caatccataaattgagaacctttattgaagatttcttttgtttgttctatagatgc |
2021046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 218 - 393
Target Start/End: Original strand, 1989175 - 1989351
Alignment:
| Q |
218 |
cacaactgattggagaacccaactgcaacctgatcaacgccaaagaattgtcaacaaaatgtaagattcagtgtcaatactgtatcactgaggttattta |
317 |
Q |
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||||| |||||||||||| ||| | ||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
1989175 |
cacaagtgattggagaactcaaatacaacctgatcaacgccatagaatcgtcaacaaaatgtaagattcagtgtcagtactttatcactgaggttattta |
1989274 |
T |
|
| Q |
318 |
aataatatttttacctgtcgttgcatttcaaaagaaaattaagaaatgaataaccaatccataac-ttgacaacctt |
393 |
Q |
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| T |
1989275 |
aatagcattgttagctgttgttgcatttgaaaagaaaattaagaaattaataatcaatccataactttgacaacctt |
1989351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 85 - 300
Target Start/End: Original strand, 2035535 - 2035751
Alignment:
| Q |
85 |
tatatatgtccctttcatgtttcttt-cagaattggctttgattgaattgttctttttctggtgcttcagatattttggatttgatgggtttgatggatt |
183 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| || | ||||||||| ||| |
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| T |
2035535 |
tatatatgtccctttcatgtttcttttcagaattggctttgattggattgttctttttctggtgcttcagatacttcgtatttgatgg---------att |
2035625 |
T |
|
| Q |
184 |
cgaaggattgggtcgctaatcagggtactgaacccacaac---------tgattggagaacccaactgcaacctgatcaacgccaaagaattgtcaacaa |
274 |
Q |
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| || |||||||| ||||||||||||| ||| |||| | |||||||||||| ||||||||||||||||||||||||||||||||||| || |
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| T |
2035626 |
ccaataattgggtccctaatcagggtacggaagccactgccgacacagttgattggagaactcaactgcaacctgatcaacgccaaagaattgtcaataa |
2035725 |
T |
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| Q |
275 |
aatgtaagattcagtgtcaatactgt |
300 |
Q |
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| T |
2035726 |
aatgtaagattcagtttcaatactgt |
2035751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 25520444 - 25520388
Alignment:
| Q |
5 |
gacagagattgaagtggaacagctcaattatttcatcatggtaaatatattgagatt |
61 |
Q |
| |
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| T |
25520444 |
gacagagattgaagtggaacagctcaattatttcatcatggtaaatatattgagatt |
25520388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 308
Target Start/End: Complemental strand, 44969406 - 44969352
Alignment:
| Q |
254 |
acgccaaagaattgtcaacaaaatgtaagattcagtgtcaatactgtatcactga |
308 |
Q |
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| T |
44969406 |
acgccaaagaattgtcaacaaaatgtaagctctagttttagtactgtatcactga |
44969352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 282
Target Start/End: Original strand, 40910583 - 40910611
Alignment:
| Q |
254 |
acgccaaagaattgtcaacaaaatgtaag |
282 |
Q |
| |
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||||||||||||||||||||||||||||| |
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|
| T |
40910583 |
acgccaaagaattgtcaacaaaatgtaag |
40910611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 254 - 282
Target Start/End: Complemental strand, 44983729 - 44983701
Alignment:
| Q |
254 |
acgccaaagaattgtcaacaaaatgtaag |
282 |
Q |
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| T |
44983729 |
acgccaaagaattgtcaacaaaatgtaag |
44983701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 298
Target Start/End: Complemental strand, 44999570 - 44999530
Alignment:
| Q |
258 |
caaagaattgtcaacaaaatgtaagattcagtgtcaatact |
298 |
Q |
| |
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| T |
44999570 |
caaagaattgtcaacaaaatgtaagtttcagttttaatact |
44999530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 42133397 - 42133433
Alignment:
| Q |
21 |
gaacagctcaattatttcatcatggtaaatatattga |
57 |
Q |
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| T |
42133397 |
gaacagctcaattatttcatcatggttagtatattga |
42133433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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