View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0684_low_18 (Length: 450)
Name: NF0684_low_18
Description: NF0684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0684_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 122 - 310
Target Start/End: Original strand, 45671407 - 45671595
Alignment:
| Q |
122 |
actaaccttgatactaactgagtaaagaaccatatcatcgaccgtggtaacattaagatgaagaatggtaagcctaagattttgtaacccaacaacaatc |
221 |
Q |
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| T |
45671407 |
actaaccttgatactaactgagtaaagaaccatatcatcgaccgtggtaacattaagatgaagaatggtaagcctaagattttgtaacccaacaacaatc |
45671506 |
T |
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| Q |
222 |
ttcataagttgtcctggttttttcttggatagaattttcatgttggcatgactatctaccattgtaacttcaatgtctgcaacagccca |
310 |
Q |
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| T |
45671507 |
ttcataagttgtcctggttttttcttggatagaattttcatgttggcatgactatctaccattgtaacttcaatgtctgcaacagccca |
45671595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 388 - 440
Target Start/End: Original strand, 45671676 - 45671728
Alignment:
| Q |
388 |
actgaggaaaagtgaagaattcagcaaaaggtggtccattatttaagcctatg |
440 |
Q |
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| T |
45671676 |
actgaggaaaagtgaagaattcagcaaaaggtggtccattatttaagcctatg |
45671728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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