View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0684_low_2 (Length: 726)

Name: NF0684_low_2
Description: NF0684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0684_low_2
NF0684_low_2
[»] chr8 (11 HSPs)
chr8 (280-683)||(28736922-28737321)
chr8 (47-225)||(28736720-28736898)
chr8 (50-218)||(28628204-28628372)
chr8 (109-218)||(28623926-28624035)
chr8 (50-230)||(28708104-28708284)
chr8 (90-230)||(28723503-28723643)
chr8 (90-230)||(28731145-28731285)
chr8 (109-204)||(28695580-28695675)
chr8 (169-230)||(28715580-28715641)
chr8 (681-710)||(23265718-23265747)
chr8 (665-710)||(37372312-37372357)
[»] scaffold0591 (1 HSPs)
scaffold0591 (50-218)||(8255-8423)
[»] chr7 (4 HSPs)
chr7 (106-209)||(49106491-49106594)
chr7 (573-604)||(12223086-12223117)
chr7 (680-710)||(40041512-40041542)
chr7 (665-710)||(21409441-21409486)
[»] chr3 (2 HSPs)
chr3 (613-658)||(22289799-22289844)
chr3 (677-710)||(55269036-55269069)
[»] chr2 (4 HSPs)
chr2 (616-657)||(21104480-21104521)
chr2 (679-710)||(31236206-31236237)
chr2 (680-710)||(14824276-14824306)
chr2 (677-710)||(34146245-34146278)
[»] chr5 (1 HSPs)
chr5 (670-710)||(30284627-30284667)
[»] chr6 (1 HSPs)
chr6 (680-710)||(32130679-32130709)
[»] chr4 (1 HSPs)
chr4 (613-658)||(2586331-2586376)


Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 280 - 683
Target Start/End: Original strand, 28736922 - 28737321
Alignment:
Q  280 tataaaaatacattacttataatctctcattagacatgggagagaaaaaatataacaaaaagtcagttgtatccaaatctttgatataaagagggatata 379  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  28736922 tataaaaatacattacttataatctctcattagacatgggagagaaaaaatataacaaaaagtcagttgtatccaaatctttgatgtaaagagggatata 28737021  T
Q  380 attatattgctgtaacacttgaataatgtttcatagaattacccttgtatatttatatttacttgatagactttttacaaaacacgttgttggatcgaaa 479  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||    
T  28737022 attatattgctgtaacacttgaataatgtttcatagaattacccttgtatatttatatttacttgatagattttttacaaaacacgttgttggatcaaaa 28737121  T
Q  480 gtattttatcatatactagtagatcattcctgtaaatttacattaaattgaaattatttgatgatatgtcaagattatc-ctgtgattatttcagtgttt 578  Q
    |||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  28737122 gtattttatcata------tagatcattcctgtaaatttacattaaattgaaattatttgatgatatgtcaagattatctctgtgattatttcagtgttt 28737215  T
Q  579 gagcaattgtaatcttgtgtgattatttgtcatgatttatgaagcctcaatattttaaaatggatgacgtatcgtat-cccagctaacactaataccttc 677  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| | |||||| |||||||||||||||| |||| ||| ||||||||  ||||||||    
T  28737216 gagcaattgtaatcttgtgtgattatttgtcaagatttatgaagccccgatatttcaaaatggatgacgtattgtatcccctgctaacaccgataccttc 28737315  T

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Target: chr8; HSP #2
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 47 - 225
Target Start/End: Original strand, 28736720 - 28736898
Alignment:
Q  47 gttacatccaattgcgaggtagacttggaagcgaaactatttgcaggtataataggacaaactgcctctaaaacaatcacccttccctcgtcagggagag 146  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  28736720 gttacatccaattgcgaggtagacttggcagcgaaactatttgcaggtataataggacaaactgcctctaaaataatcacccttccctcgtcagggagag 28736819  T
Q  147 catcataacagttcttcaagacctttaagcaatgctcgtcactccaatcatggagtatccactataaaatttggtcaat 225  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  28736820 catcataacagttcttcaacagctttaagcaatgctcgtcactccaatcatggagtatccactataaaattcggtcaat 28736898  T

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Target: chr8; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 50 - 218
Target Start/End: Original strand, 28628204 - 28628372
Alignment:
Q  50 acatccaattgcgaggtagacttggaagcgaaactatttgcaggtataataggacaaactgcctctaaaacaatcacccttccctcgtcagggagagcat 149  Q
    ||||||||||| ||||||||||| |||||  || ||||  |||| | ||| |||  |  ||||||||||||||||||| |||| || | ||||| |||||    
T  28628204 acatccaattgagaggtagactttgaagcataaatattctcaggcacaatgggaatatgtgcctctaaaacaatcacctttccatcattagggatagcat 28628303  T
Q  150 cataacagttcttcaagacctttaagcaatgctcgtcactccaatcatggagtatccactataaaattt 218  Q
    ||||||| |||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  28628304 cataacaattcttcaaaatctttaagcaatgctcatcactccaatcatggagtatccactataaaattt 28628372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 109 - 218
Target Start/End: Original strand, 28623926 - 28624035
Alignment:
Q  109 tgcctctaaaacaatcacccttccctcgtcagggagagcatcataacagttcttcaagacctttaagcaatgctcgtcactccaatcatggagtatccac 208  Q
    ||||||||||||||||||| |||| || | ||||| |||||||||||| |||||||| | ||||||||||||||| ||||||||||||||||||||||||    
T  28623926 tgcctctaaaacaatcacctttccatcattagggatagcatcataacaattcttcaaaagctttaagcaatgctcatcactccaatcatggagtatccac 28624025  T
Q  209 tataaaattt 218  Q
    ||||||||||    
T  28624026 tataaaattt 28624035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 50 - 230
Target Start/End: Original strand, 28708104 - 28708284
Alignment:
Q  50 acatccaattgcgaggtagacttggaagcgaaactatttgcaggtataataggacaaactgcctctaaaacaatcacccttccctcgtcagggagagcat 149  Q
    ||||| ||||| ||||||||| | |||||  ||| |||  ||||||||||||||  || || ||| |||||||| ||| |||| || ||||  | |||||    
T  28708104 acatctaattgggaggtagacctcgaagcataaccattatcaggtataataggaagaaatgtctccaaaacaataacctttccatcatcagtaatagcat 28708203  T
Q  150 cataacagttcttcaagacctttaagcaatgctcgtcactccaatcatggagtatccactataaaatttggtcaatatata 230  Q
    ||||||| |||||||| | |||||||||||  ||||| ||||||||||| |||||||||||||||| ||  ||||||||||    
T  28708204 cataacaattcttcaaaagctttaagcaattatcgtcgctccaatcatgtagtatccactataaaaattaatcaatatata 28708284  T

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Target: chr8; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 90 - 230
Target Start/End: Original strand, 28723503 - 28723643
Alignment:
Q  90 caggtataataggacaaactgcctctaaaacaatcacccttccctcgtcagggagagcatcataacagttcttcaagacctttaagcaatgctcgtcact 189  Q
    ||||||||||||||  || |||||| |||||||||||| |||| || | ||| | |||||| ||||| |||||||| | |||||||||||  ||||| ||    
T  28723503 caggtataataggaataaatgcctccaaaacaatcacctttccatcattaggaatagcatcgtaacaattcttcaaaagctttaagcaattatcgtcgct 28723602  T
Q  190 ccaatcatggagtatccactataaaatttggtcaatatata 230  Q
    ||||||||| |||||||||||||||| ||  ||||||||||    
T  28723603 ccaatcatgtagtatccactataaaaattaatcaatatata 28723643  T

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Target: chr8; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 90 - 230
Target Start/End: Original strand, 28731145 - 28731285
Alignment:
Q  90 caggtataataggacaaactgcctctaaaacaatcacccttccctcgtcagggagagcatcataacagttcttcaagacctttaagcaatgctcgtcact 189  Q
    ||||||||||||||  || |||||| |||||||||||| |||| || | ||| | |||||| ||||| |||||||| | |||||||||||  ||||| ||    
T  28731145 caggtataataggaataaatgcctccaaaacaatcacctttccatcattaggaatagcatcgtaacaattcttcaaaagctttaagcaattatcgtcgct 28731244  T
Q  190 ccaatcatggagtatccactataaaatttggtcaatatata 230  Q
    ||||||||| |||||||||||||||| ||  ||||||||||    
T  28731245 ccaatcatgtagtatccactataaaaattaatcaatatata 28731285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 109 - 204
Target Start/End: Original strand, 28695580 - 28695675
Alignment:
Q  109 tgcctctaaaacaatcacccttccctcgtcagggagagcatcataacagttcttcaagacctttaagcaatgctcgtcactccaatcatggagtat 204  Q
    ||||||||||||||||||| | || || | ||||| |||||||||||| |||||||| | |||||||||  |||| ||||||||||||||||||||    
T  28695580 tgcctctaaaacaatcaccttcccatcattagggatagcatcataacaattcttcaaaatctttaagcagagctcatcactccaatcatggagtat 28695675  T

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Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 169 - 230
Target Start/End: Original strand, 28715580 - 28715641
Alignment:
Q  169 ctttaagcaatgctcgtcactccaatcatggagtatccactataaaatttggtcaatatata 230  Q
    |||||||||||  ||||| ||||||||||| |||||||||||||||| ||  ||||||||||    
T  28715580 ctttaagcaattatcgtcgctccaatcatgtagtatccactataaaaattaatcaatatata 28715641  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 681 - 710
Target Start/End: Original strand, 23265718 - 23265747
Alignment:
Q  681 atatttcccgatacgtatcaggagagtatc 710  Q
    ||||||||||||||||||||||||||||||    
T  23265718 atatttcccgatacgtatcaggagagtatc 23265747  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 665 - 710
Target Start/End: Original strand, 37372312 - 37372357
Alignment:
Q  665 cactaataccttcctgatatttcccgatacgtatcaggagagtatc 710  Q
    |||| ||||||  |||||| ||||||||||||||||||||||||||    
T  37372312 cactgatacctgtctgatacttcccgatacgtatcaggagagtatc 37372357  T

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Target: scaffold0591 (Bit Score: 81; Significance: 1e-37; HSPs: 1)
Name: scaffold0591
Description:

Target: scaffold0591; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 50 - 218
Target Start/End: Complemental strand, 8423 - 8255
Alignment:
Q  50 acatccaattgcgaggtagacttggaagcgaaactatttgcaggtataataggacaaactgcctctaaaacaatcacccttccctcgtcagggagagcat 149  Q
    ||||||||||| ||||||||||| |||||  |||||||  |||| | ||| |||  |  ||||||||||||||||||| |||| || | ||||| |||||    
T  8423 acatccaattgagaggtagactttgaagcataactattctcaggcacaatgggaatatgtgcctctaaaacaatcacctttccatcattagggatagcat 8324  T
Q  150 cataacagttcttcaagacctttaagcaatgctcgtcactccaatcatggagtatccactataaaattt 218  Q
    ||||||| |||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  8323 cataacaattcttcaaaatctttaagcaatgctcatcactccaatcatggagtatccactataaaattt 8255  T

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Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 106 - 209
Target Start/End: Original strand, 49106491 - 49106594
Alignment:
Q  106 aactgcctctaaaacaatcacccttccctcgtcagggagagcatcataacagttcttcaagacctttaagcaatgctcgtcactccaatcatggagtatc 205  Q
    ||||||||| |||||||||||| |||| || || || | ||||||||| ||||||||||| | ||| ||||| || || |||||||||||||| ||||||    
T  49106491 aactgcctccaaaacaatcacctttccatcatcgggaatagcatcatagcagttcttcaaaagcttcaagcattgttcatcactccaatcatgaagtatc 49106590  T
Q  206 cact 209  Q
    ||||    
T  49106591 cact 49106594  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 573 - 604
Target Start/End: Original strand, 12223086 - 12223117
Alignment:
Q  573 gtgtttgagcaattgtaatcttgtgtgattat 604  Q
    ||||||||||||||||||||||||||||||||    
T  12223086 gtgtttgagcaattgtaatcttgtgtgattat 12223117  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 680 - 710
Target Start/End: Original strand, 40041512 - 40041542
Alignment:
Q  680 gatatttcccgatacgtatcaggagagtatc 710  Q
    |||||||||||||||||||||||||||||||    
T  40041512 gatatttcccgatacgtatcaggagagtatc 40041542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 665 - 710
Target Start/End: Original strand, 21409441 - 21409486
Alignment:
Q  665 cactaataccttcctgatatttcccgatacgtatcaggagagtatc 710  Q
    |||| |||||| |||||||  |||||||||||||||||||||||||    
T  21409441 cactgatacctgcctgatacatcccgatacgtatcaggagagtatc 21409486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 613 - 658
Target Start/End: Complemental strand, 22289844 - 22289799
Alignment:
Q  613 atttatgaagcctcaatattttaaaatggatgacgtatcgtatccc 658  Q
    |||||||||||||| ||| || ||||||||||||||||||||||||    
T  22289844 atttatgaagcctcgatacttcaaaatggatgacgtatcgtatccc 22289799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 677 - 710
Target Start/End: Complemental strand, 55269069 - 55269036
Alignment:
Q  677 cctgatatttcccgatacgtatcaggagagtatc 710  Q
    ||||||| ||||||||||||||||||||||||||    
T  55269069 cctgatacttcccgatacgtatcaggagagtatc 55269036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 616 - 657
Target Start/End: Original strand, 21104480 - 21104521
Alignment:
Q  616 tatgaagcctcaatattttaaaatggatgacgtatcgtatcc 657  Q
    ||||||||| ||||| ||||||||||||||||||||||||||    
T  21104480 tatgaagccccaatactttaaaatggatgacgtatcgtatcc 21104521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 679 - 710
Target Start/End: Complemental strand, 31236237 - 31236206
Alignment:
Q  679 tgatatttcccgatacgtatcaggagagtatc 710  Q
    ||||||||||||||||||||||||||||||||    
T  31236237 tgatatttcccgatacgtatcaggagagtatc 31236206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 680 - 710
Target Start/End: Original strand, 14824276 - 14824306
Alignment:
Q  680 gatatttcccgatacgtatcaggagagtatc 710  Q
    |||||||||||||||||||||||||||||||    
T  14824276 gatatttcccgatacgtatcaggagagtatc 14824306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 677 - 710
Target Start/End: Original strand, 34146245 - 34146278
Alignment:
Q  677 cctgatatttcccgatacgtatcaggagagtatc 710  Q
    ||||||| ||||||||||||||||||||||||||    
T  34146245 cctgatacttcccgatacgtatcaggagagtatc 34146278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 670 - 710
Target Start/End: Complemental strand, 30284667 - 30284627
Alignment:
Q  670 ataccttcctgatatttcccgatacgtatcaggagagtatc 710  Q
    |||||| ||||||| ||||||||||||||||||||||||||    
T  30284667 atacctgcctgatacttcccgatacgtatcaggagagtatc 30284627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 680 - 710
Target Start/End: Complemental strand, 32130709 - 32130679
Alignment:
Q  680 gatatttcccgatacgtatcaggagagtatc 710  Q
    |||||||||||||||||||||||||||||||    
T  32130709 gatatttcccgatacgtatcaggagagtatc 32130679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 613 - 658
Target Start/End: Original strand, 2586331 - 2586376
Alignment:
Q  613 atttatgaagcctcaatattttaaaatggatgacgtatcgtatccc 658  Q
    |||||||||||| | ||| |||||||||||||||||| ||||||||    
T  2586331 atttatgaagccccgatactttaaaatggatgacgtaccgtatccc 2586376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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