View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0684_low_23 (Length: 441)
Name: NF0684_low_23
Description: NF0684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0684_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-156; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 22 - 436
Target Start/End: Complemental strand, 22484427 - 22484017
Alignment:
| Q |
22 |
catcatcacttcttaattaaccatctctatccttcactttcctttctttcatttccttattcatcatatatacacaaaaaaccataacacnnnnnnnnnn |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
22484427 |
catcatcacttcttaattaaccatctctatccttcactttcctttctttcatttccttattcatcatatatacacaaaaa-ccataacactttttttttt |
22484329 |
T |
|
| Q |
122 |
-----atctctaccttcaaactaagttgattaagaagtgttttgtatggggatggattcttctagtggacaacaacaggtgaaatatttatttcatatca |
216 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
22484328 |
tttttatctctaccttcaaactaagttgattaagaagtgttt-gtatggggatggattcttctagtgggcaacaacaggtgaaatatttatttcatatca |
22484230 |
T |
|
| Q |
217 |
tatcatatataattatcatgcatgtagtcatgtaatatttattaacgtgacttatttgattcttgccttccatctttgtccttcaagaatttttagtact |
316 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22484229 |
tat-atatataattatcatgcatgtagtcatgtaatatttattaacgtgacttatttgattcttgccttccatctttgtccttcaagaatttttagt--- |
22484134 |
T |
|
| Q |
317 |
atactactttgaagaatgagaaaggaacatattattttccttaannnnnnnnnncttctttgaagaacaccctttggaagaaatataattagtaaagcta |
416 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22484133 |
--actactttgaagaatgagaaaggaacatattattttcctt-attttttttttcttctttgaagaacaccctttggaagaaatataattagtaaagcta |
22484037 |
T |
|
| Q |
417 |
tgttgctctcctatgctact |
436 |
Q |
| |
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||||||||||||||| |||| |
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| T |
22484036 |
tgttgctctcctatgttact |
22484017 |
T |
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