View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0684_low_26 (Length: 429)
Name: NF0684_low_26
Description: NF0684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0684_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 25 - 411
Target Start/End: Complemental strand, 29281718 - 29281332
Alignment:
| Q |
25 |
catcaattaatgctgacttggcaatatgatgatacaaaacatgaaaagatggacatgcccaaattcaggattgatggttcatccttttattggatccctt |
124 |
Q |
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| T |
29281718 |
catcaattaatgctgacttggcaatatgatgatacagaacatgaaaagatggacatgcccaaattcaggattgatggttcatccttttattggatccctt |
29281619 |
T |
|
| Q |
125 |
tgtaatattttattactaatttccttttcttttttcatggaagttaatttgtcacaatcataaaaacttcaattgacacagaagaatttaatcatttaga |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29281618 |
tgtaatattttattactaatttccttttcttttttcatggaagttaatttgtcacaatcataaaaacttcaattgacacagaagaatttaatcatttaga |
29281519 |
T |
|
| Q |
225 |
aagtaactgtctatttcttccccttttatctctacatgtccttttctcaataagaagtaaaattattataacaatcatattgaaatcaagaagaaacaaa |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
29281518 |
aagtaactgtctatttcttccccttttatctctacatgtccttttctcaataagaagtaaaattattacaacaattatattgaaatcaagaagaaacaaa |
29281419 |
T |
|
| Q |
325 |
gtatacctctcatttggagtatctttctcttgagttgctcagcacaagcctcacaatgcatattcacattaagttccactgtctctg |
411 |
Q |
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| T |
29281418 |
gtatacctctcatttggagtatctttctcttgagttgctcagcacaagcctcacaatgcatattcacattaagttccactgtctctg |
29281332 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 318 - 406
Target Start/End: Original strand, 6471307 - 6471395
Alignment:
| Q |
318 |
aaacaaagtatacctctcatttggagtatctttctcttgagttgctcagcacaagcctcacaatgcatattcacattaagttccactgt |
406 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
6471307 |
aaacaaattatacctctcatttggagtatctttctcttgagttgttcagcacaagcctcacaatgcatggtcacattaagttctactgt |
6471395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 22 - 89
Target Start/End: Original strand, 6470545 - 6470612
Alignment:
| Q |
22 |
catcatcaattaatgctgacttggcaatatgatgatacaaaacatgaaaagatggacatgcccaaatt |
89 |
Q |
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||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
6470545 |
catcatcaattcatgctgacttggcaatatgatgatgcaaaacatgaaaagatggacatgcccaaatt |
6470612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 328 - 400
Target Start/End: Original strand, 42525454 - 42525526
Alignment:
| Q |
328 |
tacctctcatttggagtatctttctcttgagttgctcagcacaagcctcacaatgcatattcacattaagttc |
400 |
Q |
| |
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||||| |||||| ||||||||| | |||||| |||||||||||||||||||| ||||| ||||| |||||||| |
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| T |
42525454 |
tacctttcattttgagtatcttccccttgagctgctcagcacaagcctcacagtgcatgttcacgttaagttc |
42525526 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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