View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0684_low_27 (Length: 423)
Name: NF0684_low_27
Description: NF0684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0684_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 94 - 402
Target Start/End: Original strand, 1794528 - 1794837
Alignment:
| Q |
94 |
cggaacatcaaatataaaagaaagactgattcaatgaagcaaaactatatagtactatttataatatagatcatgagtgaaccattagtctcagaatgac |
193 |
Q |
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| T |
1794528 |
cggaacatcaaatataaaagaaagactgattcaatgaagcaaaacgatatagtactatttataatatagttcatgaatgaaccattagtctcagaatgac |
1794627 |
T |
|
| Q |
194 |
ccgtactgaatttttcccattcactcaactctaaaacattattatgataattctcgtattcaccaaattgaaatccgaaaatttgcatccacatgttagg |
293 |
Q |
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| T |
1794628 |
ccgtactgaatttttcccattcactcaactctaaaacattattatgataattctcatattcaccaaattgaaatccgaaaatttgcatccacatgttagg |
1794727 |
T |
|
| Q |
294 |
tgaatacaaaggagcgtcattgatgaatatagttctttttaga-ccccttaatgtttcttagaaacaacactgccaatactgctattgacactcccttca |
392 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1794728 |
tgaatacaaaggagcgtcattgatgaatatagttctttttagacccccttaatgtttcttagaaacaacactgccaatactgctattgacactcccttca |
1794827 |
T |
|
| Q |
393 |
attgatgatg |
402 |
Q |
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|||||||| |
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| T |
1794828 |
gatgatgatg |
1794837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 115 - 402
Target Start/End: Original strand, 1811408 - 1811692
Alignment:
| Q |
115 |
aagactgattcaatgaagcaaaactatatagtactatttataatatagatcatgagtgaaccattagtctcagaatgacccgtactgaattt-ttcccat |
213 |
Q |
| |
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||||||||||||||||||||||| || ||||||||||||||||||| |||||||||| ||||||| || |||||| | || || |||| ||||||| |
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| T |
1811408 |
aagactgattcaatgaagcaaaatgatttagtactatttataatataattcatgagtgaggcattagttccaaaatgactcataatggatttcttcccat |
1811507 |
T |
|
| Q |
214 |
tcactcaactctaaaa-cattattatgataattctcgtattcaccaaattgaaatccgaaaatttgcatccacatgttaggtgaatacaaaggagcgtca |
312 |
Q |
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|||||||||||||||| ||||||| |||||| || | |||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||| ||| |
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| T |
1811508 |
tcactcaactctaaaaacattattttgataactcccatattcatcaaattgaaatccaaaaatttgcatccacatgttaggtgaatccaaaggagcctca |
1811607 |
T |
|
| Q |
313 |
ttgatgaatatagttcttttt-agaccccttaatgtttcttagaaacaacactgccaatactgctattgacactcccttcaattgatgatg |
402 |
Q |
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| T |
1811608 |
---atgaacat--ttctttttaagccccatcattgtctttta-aaacaacaccgccattactgctattgatactcccttcagatgatgatg |
1811692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 152 - 317
Target Start/End: Original strand, 1814591 - 1814757
Alignment:
| Q |
152 |
ttataatatagatcatgagtgaaccattagtctcagaatgacccgtactgaattt-ttcccattcactcaactctaaaacattattatgataattctcgt |
250 |
Q |
| |
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||||| ||||| |||||| |||| || ||||| || |||||| | |||||||||| |||||||||||||||||||||||||||||||| ||||||| | |
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| T |
1814591 |
ttatattatagttcatgattgaatcactagtcccacaatgactcatactgaatttcttcccattcactcaactctaaaacattattatcataattcctat |
1814690 |
T |
|
| Q |
251 |
attcaccaaattgaaatccgaaaatttgcatccacatgttaggtgaatacaaaggagcgtcattgat |
317 |
Q |
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| T |
1814691 |
attcatcaaattgaaatccaaacatttgcatccacattttaggtgaatccaaaggagcctcattgat |
1814757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 12393627 - 12393578
Alignment:
| Q |
16 |
atgtgcattcacggcttcgtttagattgcctccatattcctgcacagtgc |
65 |
Q |
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| T |
12393627 |
atgtgcattcacggcttcgtttagattgcctccatattcctgcacagtgc |
12393578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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