View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0684_low_3 (Length: 650)
Name: NF0684_low_3
Description: NF0684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0684_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 97 - 598
Target Start/End: Complemental strand, 5070236 - 5069732
Alignment:
| Q |
97 |
ttatcatcaataaattaaacacaactggtagtannnnnnnaaggatcgtggataactcaaatgagattacgtaatatgatggagcaagtatatgtgtctg |
196 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5070236 |
ttatcatcaataaattaaacacaactggtagtatttttttaaggatcgtggataactcaaatgagattacgtaatatgatggagcaagtatatgtgtctg |
5070137 |
T |
|
| Q |
197 |
gtcttaaatactgtccaaatgtctggtcttaaacgacagttata---tgaaacaatgatgaagtattaatttatttgcagaagtttcaaaattttgtgat |
293 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5070136 |
gtcttaaatattgtccaaatgtctggtcttaaacgacagttatactatgagacaatgatgaagtattaatttatttgcagaagtttcaaaattttgtgat |
5070037 |
T |
|
| Q |
294 |
gctactgccgtctgctccaatggctgtggtgaagtataagagattttcatggacctgaaaaattgtttttattttaagataactaacaatgaaatcttta |
393 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
5070036 |
gctactgccgtctgctccaatggctgtggtgaagtataagagattttcatggaccttaaaaattgtttttattttaagataactaacaatgaaatctttg |
5069937 |
T |
|
| Q |
394 |
gattttatgtaggtttattcttattaatagtgactactaggtaggtagtgtgtcctacaacaggccactaatatgttagcgacaatactatccattaatt |
493 |
Q |
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|
||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5069936 |
gattttaagtaggtttattcttattaatagtgactactaggtaggtagtgcgtcctactacaggccactaatatgttagccacaatactatccattaatt |
5069837 |
T |
|
| Q |
494 |
tgtttcttcttctcattttgttgtatgttgttaatttattttataagaagtatgttgttaatttcttgtgtttgctatttatttgtttgtttgttcttac |
593 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5069836 |
tgtttcttcttctcattttgttgtatgttgttaatttattttataagaagtatgttgttaatttcttgtgtttgctatttatttgtttgtttgttcttac |
5069737 |
T |
|
| Q |
594 |
tatta |
598 |
Q |
| |
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||||| |
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|
| T |
5069736 |
tatta |
5069732 |
T |
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