View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0684_low_31 (Length: 395)
Name: NF0684_low_31
Description: NF0684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0684_low_31 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 18 - 366
Target Start/End: Original strand, 49293007 - 49293350
Alignment:
| Q |
18 |
cacacattatttaacgctttactatagtaattaaggaactcatagttgaggaatgaagtttcttcctcaacaaaatagattgaataaagagaatcacagt |
117 |
Q |
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| T |
49293007 |
cacacattatttaacgctttaatatagtaatta-ggaactcatagttgaggaatgaagtttcttcctcaacaaaatagattgaataaagagaatcacagt |
49293105 |
T |
|
| Q |
118 |
gaaggactatcaacccatatatacctaggctaaatctctagtatgacaataaatttggcacccatgaaaatttcaattctccatatcaaaactatgtttg |
217 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49293106 |
tgaggactatcaacccata----cctaggctaaatctctagtatgacaataaatttggcacccatgaaaatttcaattctccatatcaaaactatgtttg |
49293201 |
T |
|
| Q |
218 |
gtgtatgcacttgagatcttaaaagagtcttggcattttggttgaactgtcgtcgtcaacttcaataaggtgatgccaacaaagactaaacaagccttca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49293202 |
gtgtatgcacttgagatcttaaaagagtcttggcattttggttgaactgtcgtcgtcaacttcaataaggtgatgccaacaaagactaaacaagccttca |
49293301 |
T |
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| Q |
318 |
caaacaataggaatgctaacatatgaaactcctcgtcgtgttcatgagg |
366 |
Q |
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| T |
49293302 |
caaacaataggaatgctaacatatgaaactcctcgtagtgtttatgagg |
49293350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 199 - 254
Target Start/End: Original strand, 17919358 - 17919413
Alignment:
| Q |
199 |
catatcaaaactatgtttggtgtatgcacttgagatcttaaaagagtcttggcatt |
254 |
Q |
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| T |
17919358 |
catatcaagactatgtttggcgtatgcacttgagatctacaaagaatcttgtcatt |
17919413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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