View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0684_low_33 (Length: 395)
Name: NF0684_low_33
Description: NF0684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0684_low_33 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 16 - 395
Target Start/End: Original strand, 9106835 - 9107211
Alignment:
| Q |
16 |
ggccagtgcatatggaccaactaatatcaactctcaaagttaaatcaaaggaatcatgatgctgggacgtggtaactgaaggataaaaaacacaaaatga |
115 |
Q |
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| T |
9106835 |
ggccagtgcatatggaccaactaatatcaactctcaaagttaaatcaaaggaatcatgatgctgggacgtggtaactgaaggataaaaaacacaaaatga |
9106934 |
T |
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| Q |
116 |
gagaaaagcaaaagcttaccccagaattttgcatcttccataaagattctccacttgaatcaacaacaaccatcgcacctaatatagcactggacaaaaa |
215 |
Q |
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| T |
9106935 |
gagaaaagcaaaagcttaccccagaattttgcatcttccataaagattctccacttgaatcaacaacaaccatcgcacctaatatagctctggacaaaaa |
9107034 |
T |
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| Q |
216 |
tcttccatcaggttatcagaaaaatactgttaaactcagcagctaaatacttgatagtttttgtagatacagattaatgatctgagcataattaatttaa |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
9107035 |
tcttccatcaggttatcagaaaaatactgttaaactcagcagctaaatacttgatagtttttgtagatacagattaatgatttgagcataattaatttaa |
9107134 |
T |
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| Q |
316 |
ggagttctttaaagccagtggcgggtatgataaatatggaacctgagttcaatgtgctcttctttcttttcttcaacaaa |
395 |
Q |
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| T |
9107135 |
ggtgttctttaaagccagtggcgggtatgataaatatggaacctgagttcaatgtgc---tctttcttttcttcaacaaa |
9107211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 241
Target Start/End: Original strand, 9127526 - 9127574
Alignment:
| Q |
193 |
cctaatatagcactggacaaaaatcttccatcaggttatcagaaaaata |
241 |
Q |
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||||||||||| | ||| |||||||||||||||| ||||||| |||||| |
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| T |
9127526 |
cctaatatagctccggagaaaaatcttccatcagcttatcagcaaaata |
9127574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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