View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0684_low_36 (Length: 392)
Name: NF0684_low_36
Description: NF0684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0684_low_36 |
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Alignment Details
Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 31 - 254
Target Start/End: Original strand, 26859043 - 26859268
Alignment:
| Q |
31 |
aatatccataatttctacatgaatagcatgattatcgccaattccgtaattaaaacgtaattaatttatctccagtaatccccttacaaaatcacgtnnn |
130 |
Q |
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| T |
26859043 |
aatatccacaatttctacacgaa-agcaaaattatcgccaattccgtaattaaaacgtaattaatttatctccagtaatcccctaacaaaatcacgtaaa |
26859141 |
T |
|
| Q |
131 |
nnnnnnn---cgaaatgaaaacttcaacagcaatatccataatttctacatgaatagcatgattatcgccaattccgtaattaaaacctaattcattcat |
227 |
Q |
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| T |
26859142 |
aaaaaaaaaacgaaatgaaaacttcaacagcaatatccataatttctacatgaatagcatgattatcgccaattccgtaattaaaacctgattaattcat |
26859241 |
T |
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| Q |
228 |
ctccattaatctctcacgtaatcacgt |
254 |
Q |
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| T |
26859242 |
ctccattaatctctcacgtaatcacgt |
26859268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 10 - 110
Target Start/End: Original strand, 26859152 - 26859252
Alignment:
| Q |
10 |
cgaaatgaaaacttcaacagcaatatccataatttctacatgaatagcatgattatcgccaattccgtaattaaaacgtaattaatttatctccagtaat |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||| |||| |
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| T |
26859152 |
cgaaatgaaaacttcaacagcaatatccataatttctacatgaatagcatgattatcgccaattccgtaattaaaacctgattaattcatctccattaat |
26859251 |
T |
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| Q |
110 |
c |
110 |
Q |
| |
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| |
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|
| T |
26859252 |
c |
26859252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 294 - 388
Target Start/End: Original strand, 26859308 - 26859402
Alignment:
| Q |
294 |
ttaccaaatgcataagcagtagctggattaaactcattcctcacaatcttatcaccatcagcataccacgcaatttcgtctcccctatgctactc |
388 |
Q |
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| T |
26859308 |
ttaccaaaagcataagcagtagctggattaaactcattcctcacaatcttatcaccatcagcataccacgcaatttcgtctcctctatgatactc |
26859402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 348
Target Start/End: Original strand, 19910568 - 19910616
Alignment:
| Q |
300 |
aatgcataagcagtagctggattaaactcattcctcacaatcttatcac |
348 |
Q |
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||||||||||||||||||||| | ||| ||||||||||||||||||| |
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| T |
19910568 |
aatgcataagcagtagctggaatttacttgttcctcacaatcttatcac |
19910616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 295 - 370
Target Start/End: Original strand, 54894975 - 54895050
Alignment:
| Q |
295 |
taccaaatgcataagcagtagctggattaaactcattcctcacaatcttatcaccatcagcataccacgcaatttc |
370 |
Q |
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||||||||||||||||||| ||||||||| ||||||| || ||||||||||||||||||||||||||||| ||||| |
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| T |
54894975 |
taccaaatgcataagcagttgctggattatactcatttctaacaatcttatcaccatcagcataccacgcgatttc |
54895050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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