View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0684_low_38 (Length: 387)

Name: NF0684_low_38
Description: NF0684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0684_low_38
NF0684_low_38
[»] chr4 (1 HSPs)
chr4 (91-359)||(17983353-17983618)
[»] chr2 (1 HSPs)
chr2 (91-359)||(2997097-2997362)
[»] chr6 (3 HSPs)
chr6 (91-181)||(14860677-14860766)
chr6 (91-193)||(14858643-14858743)
chr6 (91-193)||(18675892-18675992)
[»] chr5 (2 HSPs)
chr5 (92-193)||(40667252-40667352)
chr5 (117-177)||(30773451-30773510)
[»] scaffold0031 (1 HSPs)
scaffold0031 (91-150)||(89953-90012)
[»] scaffold0882 (1 HSPs)
scaffold0882 (91-174)||(1081-1162)
[»] scaffold0766 (1 HSPs)
scaffold0766 (91-174)||(2241-2322)
[»] chr1 (2 HSPs)
chr1 (92-140)||(21197651-21197699)
chr1 (98-160)||(16850572-16850635)
[»] chr3 (2 HSPs)
chr3 (98-160)||(3273410-3273473)
chr3 (98-160)||(3276820-3276883)
[»] chr8 (1 HSPs)
chr8 (91-151)||(39037714-39037777)


Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 91 - 359
Target Start/End: Original strand, 17983353 - 17983618
Alignment:
Q  91 cattgttagtgtgtgatttattttcttgagagttttttaaccacttacaacaatgtcctaatacaaataataaaaactcaagacttaatagttaatagct 190  Q
    ||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  17983353 cattgttagtgtgtgatttattttcatgagagtttt--aaccacttacaacaatgtcctaatacaaataataaaaactcaagacttaatagttgatagct 17983450  T
Q  191 tgagctcctaaatcatagtatttatttcaagacgtattttcatacgtaccacctttccaacaaaaccacggtacctcaccctccatcaaccatcctctgc 290  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||    
T  17983451 tgagctcctaaatcaaagtatttatttcaagacgtattttcatacgtaccacctttccaacaaaaccacggtacctc-ccctccatcaaccatcctttgc 17983549  T
Q  291 cacctagatcttacccacataaaattgttagaatcaataacaatgtgtgtgaccccaaatgacaatgtt 359  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  17983550 cacctagatcttacccacataaatttgttagaatcaataacaatgtgtatgaccccaaatgacaatgtt 17983618  T

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Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 91 - 359
Target Start/End: Original strand, 2997097 - 2997362
Alignment:
Q  91 cattgttagtgtgtgatttattttcttgagagttttttaaccacttacaacaatgtcctaatacaaataataaaaactcaagacttaatagttaatagct 190  Q
    ||||||||||||||||||||||||| ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  2997097 cattgttagtgtgtgatttattttcatgagagtttt--aaccacttacaacaatgtcctaatacaaataataaaaactcaagacttaatagttgatagct 2997194  T
Q  191 tgagctcctaaatcatagtatttatttcaagacgtattttcatacgtaccacctttccaacaaaaccacggtacctcaccctccatcaaccatcctctgc 290  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||    
T  2997195 tgagctcctaaatcaaagtatttatttcaagacgtattttcatacgtaccacctttccaacaaaaccacggtacctc-ccctccatcaaccatcctttgc 2997293  T
Q  291 cacctagatcttacccacataaaattgttagaatcaataacaatgtgtgtgaccccaaatgacaatgtt 359  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  2997294 cacctagatcttacccacataaatttgttagaatcaataacaatgtgtatgaccccaaatgacaatgtt 2997362  T

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Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 91 - 181
Target Start/End: Complemental strand, 14860766 - 14860677
Alignment:
Q  91 cattgttagtgtgtgatttattttcttgagagttttttaaccacttacaacaatgtcctaatacaaataataaaaactcaagacttaatag 181  Q
    |||||| |||||||||||||||||| |||||| ||||||||||||||||| || ||||||||| ||| || ||||||||||||||| ||||    
T  14860766 cattgtgagtgtgtgatttattttcatgagagctttttaaccacttacaataaagtcctaatataaacaa-aaaaactcaagacttgatag 14860677  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 91 - 193
Target Start/End: Complemental strand, 14858743 - 14858643
Alignment:
Q  91 cattgttagtgtgtgatttattttcttgagagttttttaaccacttacaacaatgtcctaatacaaataataaaaactcaagacttaatagttaatagct 190  Q
    |||||| |||||||||||||||||| |||||| ||||||||||||||||| || ||||||||| ||| |  |||||||||||||| || | || ||||||    
T  14858743 cattgtgagtgtgtgatttattttcatgagagctttttaaccacttacaataaagtcctaatataaaga--aaaaactcaagactcaagacttgatagct 14858646  T
Q  191 tga 193  Q
    |||    
T  14858645 tga 14858643  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 91 - 193
Target Start/End: Complemental strand, 18675992 - 18675892
Alignment:
Q  91 cattgttagtgtgtgatttattttcttgagagttttttaaccacttacaacaatgtcctaatacaaataataaaaactcaagacttaatagttaatagct 190  Q
    |||||| |||||||||||||||||| |||||| ||||||||||||||||| || ||||||||| ||| |  |||||||||||||| || | || ||||||    
T  18675992 cattgtgagtgtgtgatttattttcatgagagctttttaaccacttacaataaagtcctaatataaaca--aaaaactcaagactcaagatttgatagct 18675895  T
Q  191 tga 193  Q
    |||    
T  18675894 tga 18675892  T

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Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 92 - 193
Target Start/End: Original strand, 40667252 - 40667352
Alignment:
Q  92 attgttagtgtgtgatttattttcttgagagttttttaaccacttacaacaatgtcctaatacaaataataaaaactcaagacttaatagttaatagctt 191  Q
    ||||| ||||||||||||||||||| ||||| |||||| ||||||| || || ||||||||| |||||| |||||||||||||| || | || |||||||    
T  40667252 attgtgagtgtgtgatttattttctcgagagctttttatccacttataataaagtcctaatataaataa-aaaaactcaagactcaagacttgatagctt 40667350  T
Q  192 ga 193  Q
    ||    
T  40667351 ga 40667352  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 177
Target Start/End: Original strand, 30773451 - 30773510
Alignment:
Q  117 tgagagttttttaaccacttacaacaatgtcctaatacaaataataaaaactcaagactta 177  Q
    |||||||| ||| | ||||||||| ||  ||||||||||||| ||||||||||||||||||    
T  30773451 tgagagttcttttatcacttacaaaaaa-tcctaatacaaatcataaaaactcaagactta 30773510  T

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Target: scaffold0031 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 91 - 150
Target Start/End: Original strand, 89953 - 90012
Alignment:
Q  91 cattgttagtgtgtgatttattttcttgagagttttttaaccacttacaacaatgtccta 150  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||||||| || ||||||    
T  89953 cattgtgagtgtgtgatttattttcttgagagctttttaaccacttacaataaagtccta 90012  T

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Target: scaffold0882 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0882
Description:

Target: scaffold0882; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 91 - 174
Target Start/End: Original strand, 1081 - 1162
Alignment:
Q  91 cattgttagtgtgtgatttattttcttgagagttttttaaccacttacaacaatgtcctaatacaaataataaaaactcaagac 174  Q
    |||||| ||||||||||||||||| ||||||| ||||||||||||||||| || || |||||| ||| |  |||||||||||||    
T  1081 cattgtgagtgtgtgatttatttttttgagagctttttaaccacttacaataaagttctaatataaaca--aaaaactcaagac 1162  T

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Target: scaffold0766 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0766
Description:

Target: scaffold0766; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 91 - 174
Target Start/End: Complemental strand, 2322 - 2241
Alignment:
Q  91 cattgttagtgtgtgatttattttcttgagagttttttaaccacttacaacaatgtcctaatacaaataataaaaactcaagac 174  Q
    |||||| ||||||||||||||||| ||||||| ||||||||||||||||| || || |||||| ||| |  |||||||||||||    
T  2322 cattgtgagtgtgtgatttatttttttgagagctttttaaccacttacaataaagttctaatataaaca--aaaaactcaagac 2241  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 21197699 - 21197651
Alignment:
Q  92 attgttagtgtgtgatttattttcttgagagttttttaaccacttacaa 140  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  21197699 attgtgagtgtgtgatttattttcttgagagatttttaaccacttacaa 21197651  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 98 - 160
Target Start/End: Complemental strand, 16850635 - 16850572
Alignment:
Q  98 agtgtgtgatttattttcttgagag-ttttttaaccacttacaacaatgtcctaatacaaataa 160  Q
    ||||| ||||||||||||||||||| |||||||||||||||||| || ||||||| ||| ||||    
T  16850635 agtgtatgatttattttcttgagagcttttttaaccacttacaataaagtcctaacacatataa 16850572  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 98 - 160
Target Start/End: Complemental strand, 3273473 - 3273410
Alignment:
Q  98 agtgtgtgatttattttcttgagag-ttttttaaccacttacaacaatgtcctaatacaaataa 160  Q
    ||||| ||||||||||||||||||| |||||||||||||||||| || ||||||| ||| ||||    
T  3273473 agtgtatgatttattttcttgagagcttttttaaccacttacaataaagtcctaacacatataa 3273410  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 98 - 160
Target Start/End: Complemental strand, 3276883 - 3276820
Alignment:
Q  98 agtgtgtgatttattttcttgagag-ttttttaaccacttacaacaatgtcctaatacaaataa 160  Q
    ||||| ||||||||||||||||||| |||||||||||||||||| || ||||||| ||| ||||    
T  3276883 agtgtatgatttattttcttgagagcttttttaaccacttacaataaagtcctaacacatataa 3276820  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 151
Target Start/End: Complemental strand, 39037777 - 39037714
Alignment:
Q  91 cattgttagtgtgtgatttattttcttgagag---ttttttaaccacttacaacaatgtcctaa 151  Q
    |||||| ||||| |||||||||||||||||||   ||||||||||||||| || || |||||||    
T  39037777 cattgtgagtgtatgatttattttcttgagagcttttttttaaccacttaaaataaagtcctaa 39037714  T

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