View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0684_low_43 (Length: 370)

Name: NF0684_low_43
Description: NF0684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0684_low_43
NF0684_low_43
[»] chr5 (3 HSPs)
chr5 (1-242)||(4746256-4746493)
chr5 (235-276)||(33678147-33678188)
chr5 (240-276)||(9910416-9910452)
[»] chr1 (3 HSPs)
chr1 (238-276)||(8396352-8396390)
chr1 (242-276)||(13203291-13203325)
chr1 (238-276)||(48760120-48760158)
[»] chr7 (2 HSPs)
chr7 (237-276)||(24953302-24953341)
chr7 (237-276)||(38665882-38665921)
[»] chr8 (1 HSPs)
chr8 (222-276)||(37676311-37676365)
[»] chr4 (2 HSPs)
chr4 (235-276)||(45692998-45693039)
chr4 (240-276)||(126579-126615)


Alignment Details
Target: chr5 (Bit Score: 179; Significance: 2e-96; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 4746493 - 4746256
Alignment:
Q  1 tagttttctgtttgtgttttttgcaatgtctttgataacttctttggttgctagtgtttatatagtgccaacgtatgtacatggatacnnnnnnnnnctt 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||    
T  4746493 tagttttttgtttgtgttttttgcaatgtctttgataacttctttggttgctagtgtttatatagtgccaacgtatgtacatggataccttttt----tt 4746398  T
Q  101 cccctcgttagaacaaatgtacggatacttatgagttactttgtacgtaagtaatgttaatgagtgcatgaagttacttgttaagcatcttaaagagtcc 200  Q
     |||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  4746397 tccctcgttagaaaaaatgtacggatgcttgtgagttactttgtacgtaagtaatgttaatgagtgcatgaagttacttgttaagcatcttaaagagtac 4746298  T
Q  201 ttgtcaagtatcattctagcattttttatatgtcttaaaata 242  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  4746297 ttgtcaagtatcattttagcattttttatatgtcttaaaata 4746256  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 276
Target Start/End: Original strand, 33678147 - 33678188
Alignment:
Q  235 ttaaaataggcaaattctacagtacacccactatatttgagt 276  Q
    |||||| ||||||||||||  |||||||||||||||||||||    
T  33678147 ttaaaaaaggcaaattctatggtacacccactatatttgagt 33678188  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 276
Target Start/End: Complemental strand, 9910452 - 9910416
Alignment:
Q  240 ataggcaaattctacagtacacccactatatttgagt 276  Q
    ||||||||||||||  |||||||||||||||||||||    
T  9910452 ataggcaaattctatggtacacccactatatttgagt 9910416  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 276
Target Start/End: Original strand, 8396352 - 8396390
Alignment:
Q  238 aaataggcaaattctacagtacacccactatatttgagt 276  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  8396352 aaataggcaaattctacagtacactcactatatttgagt 8396390  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 276
Target Start/End: Complemental strand, 13203325 - 13203291
Alignment:
Q  242 aggcaaattctacagtacacccactatatttgagt 276  Q
    ||||||||||||||||||||||||| |||||||||    
T  13203325 aggcaaattctacagtacacccactgtatttgagt 13203291  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 276
Target Start/End: Original strand, 48760120 - 48760158
Alignment:
Q  238 aaataggcaaattctacagtacacccactatatttgagt 276  Q
    ||||||||||||||||  |||||||||||||||||||||    
T  48760120 aaataggcaaattctatggtacacccactatatttgagt 48760158  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 237 - 276
Target Start/End: Complemental strand, 24953341 - 24953302
Alignment:
Q  237 aaaataggcaaattctacagtacacccactatatttgagt 276  Q
    |||||||||||||||||  |||||||||||||||||||||    
T  24953341 aaaataggcaaattctatggtacacccactatatttgagt 24953302  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 237 - 276
Target Start/End: Original strand, 38665882 - 38665921
Alignment:
Q  237 aaaataggcaaattctacagtacacccactatatttgagt 276  Q
    |||| ||||||||||||||||||| |||||||||||||||    
T  38665882 aaaaaaggcaaattctacagtacatccactatatttgagt 38665921  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 276
Target Start/End: Complemental strand, 37676365 - 37676311
Alignment:
Q  222 ttttttatatgtcttaaaataggcaaattctacagtacacccactatatttgagt 276  Q
    |||||||| ||| ||| || ||||||||||||  |||||||||||||||||||||    
T  37676365 ttttttatttgtattataaaaggcaaattctatggtacacccactatatttgagt 37676311  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 276
Target Start/End: Complemental strand, 45693039 - 45692998
Alignment:
Q  235 ttaaaataggcaaattctacagtacacccactatatttgagt 276  Q
    |||| ||||||||||||||  |||||||||||||||||||||    
T  45693039 ttaacataggcaaattctatggtacacccactatatttgagt 45692998  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 276
Target Start/End: Original strand, 126579 - 126615
Alignment:
Q  240 ataggcaaattctacagtacacccactatatttgagt 276  Q
    ||||||||||||||| |||||| ||||||||||||||    
T  126579 ataggcaaattctacggtacactcactatatttgagt 126615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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