View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0684_low_5 (Length: 580)
Name: NF0684_low_5
Description: NF0684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0684_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 174; Significance: 2e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 30 - 207
Target Start/End: Original strand, 2480497 - 2480674
Alignment:
| Q |
30 |
attattatcatcacaatttggtgttagggaattggcatcttcagtttgatcctttggtatagggaaattggttttggcattttttccattcatcaatatg |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2480497 |
attattatcatcacaatttggtgttagggaattggcatcttcagtttgatcctttggtatagggaaattggttttggcattttttccattcatcaatatg |
2480596 |
T |
|
| Q |
130 |
gctgcttgatcatatgctctggctgcagcctctgctgtctcaaatgtacctagccatacccttctcttcctgtgtaaa |
207 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2480597 |
gccgcttgatcatatgctctggctgcagcctctgctgtctcaaatgtacctagccatacccttctcttcctgtgtaaa |
2480674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 442 - 570
Target Start/End: Original strand, 2480735 - 2480863
Alignment:
| Q |
442 |
tatagtgttggagaagtagattacagtaaagggtgacgaatttctgagacccatgagccccactgtcgttgtctaactcctctgaacttgttacgttgta |
541 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2480735 |
tatagtgttggagaagtagattacagtaaagggtgacgaatttctgagacccatgagccccactgtcgttgtctaactcctctgaacttgttacgttgta |
2480834 |
T |
|
| Q |
542 |
ccatgatcgattggtgcctaatgcctttg |
570 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
2480835 |
ccatgatcgattggtgcctaatgcctttg |
2480863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 91 - 200
Target Start/End: Original strand, 47101311 - 47101420
Alignment:
| Q |
91 |
gggaaattggttttggcattttttccattcatcaatatggctgcttgatcatatgctctggctgcagcctctgctgtctcaaatgtacctagccataccc |
190 |
Q |
| |
|
|||||||| |||||||||||| | ||| |||| || || || ||||||||||||||||| ||||| | |||||||| |||||||| |||||||| |||| |
|
|
| T |
47101311 |
gggaaatttgttttggcatttctaccactcattaaaatcgcagcttgatcatatgctcttgctgcttcttctgctgtttcaaatgttcctagccacaccc |
47101410 |
T |
|
| Q |
191 |
ttctcttcct |
200 |
Q |
| |
|
|||||||||| |
|
|
| T |
47101411 |
ttctcttcct |
47101420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 90 - 200
Target Start/End: Original strand, 2428636 - 2428746
Alignment:
| Q |
90 |
agggaaattggttttggcattttttccattcatcaatatggctgcttgatcatatgctctggctgcagcctctgctgtctcaaatgtacctagccatacc |
189 |
Q |
| |
|
||||||||| ||||| |||||| ||||| |||| | |||||||||| |||||||||||| ||||| | || |||||||||||||| |||| ||| ||| |
|
|
| T |
2428636 |
agggaaatttgtttttgcatttcttccactcattagaatggctgcttcatcatatgctctagctgcttcttcagctgtctcaaatgttcctaaccaaacc |
2428735 |
T |
|
| Q |
190 |
cttctcttcct |
200 |
Q |
| |
|
|| || ||||| |
|
|
| T |
2428736 |
ctccttttcct |
2428746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 130 - 200
Target Start/End: Complemental strand, 1726313 - 1726243
Alignment:
| Q |
130 |
gctgcttgatcatatgctctggctgcagcctctgctgtctcaaatgtacctagccatacccttctcttcct |
200 |
Q |
| |
|
||||||| |||||||||||| |||||| | |||||||| |||||||| |||| ||||| ||| ||||||| |
|
|
| T |
1726313 |
gctgcttcatcatatgctcttgctgcatcttctgctgtttcaaatgttcctaaccatattcttgtcttcct |
1726243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 90 - 202
Target Start/End: Complemental strand, 49532676 - 49532564
Alignment:
| Q |
90 |
agggaaattggttttggcattttttccattcatcaatatggctgcttgatcatatgctctggctgcagcctctgctgtctcaaatgtacctagccatacc |
189 |
Q |
| |
|
||||||||| || || ||| ||| ||||||||||| || || ||||||||||||||||| ||||| || ||||| ||||||||||| |||| ||| ||| |
|
|
| T |
49532676 |
agggaaattagtctttgcactttgaccattcatcaaaattgcagcttgatcatatgctcttgctgctgcttctgccgtctcaaatgttcctaaccacacc |
49532577 |
T |
|
| Q |
190 |
cttctcttcctgt |
202 |
Q |
| |
|
|||||||| |||| |
|
|
| T |
49532576 |
cttctctttctgt |
49532564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 469 - 530
Target Start/End: Complemental strand, 49532403 - 49532342
Alignment:
| Q |
469 |
aaagggtgacgaatttctgagacccatgagccccactgtcgttgtctaactcctctgaactt |
530 |
Q |
| |
|
|||||||| ||||||||||| ||||| ||||||||||| || || || |||||||||||||| |
|
|
| T |
49532403 |
aaagggtggcgaatttctgacacccaagagccccactggcgctgcctgactcctctgaactt |
49532342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 17 times since January 2019
Visitors: 4368