View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0684_low_57 (Length: 326)
Name: NF0684_low_57
Description: NF0684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0684_low_57 |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 21185786 - 21186079
Alignment:
| Q |
1 |
tcaatctaagaaactatctctgctatgattcttgaataagtgttctgacaagagtttagagagaaagatcttgtgaaacaaagtgaggaaatgattgttt |
100 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
21185786 |
tcaatctaagaaactatctctactatgattcttgaataagtgttctgacaagagtttagagagaaagatcctgtgaaacaaagtgaggaaatgattgttt |
21185885 |
T |
|
| Q |
101 |
caaaagtgagtaattatctggttgggatatatttatagttggagtggtttagaacaaatgaaagctgaaaaatagtgataaaacaggacatgaatcgatt |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21185886 |
caaaagtgagtaattatctgtttgggatatatttatagttggagtggtttagaacaaatgaaagctgaaaaatagtgataaaacaggacatgaatcgatt |
21185985 |
T |
|
| Q |
201 |
cagatacgttatgattcgattcataagttaaaaaacgaattatttgttcatatgaagattgtatcgattgatcaccaagaacaaatgatcttga |
294 |
Q |
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|||| |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
21185986 |
cagagacgttatgattcgattcagaagttcaaaaacgaattatttgttcatatgaagattgtatctattgatcaccaagaacaaatgatcttga |
21186079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 126 - 183
Target Start/End: Original strand, 41755201 - 41755258
Alignment:
| Q |
126 |
gatatatttatagttggagtggtttagaacaaatgaaagctgaaaaatagtgataaaa |
183 |
Q |
| |
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||||||||||||||||||| |||||||||| ||||||||||||||| |||| |||| |
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| T |
41755201 |
gatatatttatagttggagatttttagaacaattgaaagctgaaaaatggtgaaaaaa |
41755258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 178
Target Start/End: Complemental strand, 8422291 - 8422243
Alignment:
| Q |
130 |
tatttatagttggagtggtttagaacaaatgaaagctgaaaaatagtga |
178 |
Q |
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||||||||||||||| | ||||||||||||||||||| |||||| |||| |
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| T |
8422291 |
tatttatagttggagagttttagaacaaatgaaagctcaaaaatggtga |
8422243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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