View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0684_low_6 (Length: 557)
Name: NF0684_low_6
Description: NF0684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0684_low_6 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 441; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 55 - 523
Target Start/End: Complemental strand, 38707857 - 38707390
Alignment:
| Q |
55 |
ttaccaacaccatttggaccaaggaataggaagggaccagttggttgttgaggtcttcttaaaccaactctcagatctcactacagccccagcaaaaact |
154 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
38707857 |
ttaccaacactatttggaccaaggaataggaagggaccagttggtttttgaggtcttcttaaaccaactctc-gatctcactacagccccagcaaaaact |
38707759 |
T |
|
| Q |
155 |
ttaactgcttggtcttgtcccacaactctactgtgcaatttgtcaccaagtccaaccaacctttctttatcattttgcactagacgagtcaccggtgtac |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38707758 |
ttaactgcttggtcttgtcccacaactctactgtgcaatttgtcaccaagtccaaccaacctttctttatcattttgcactagacgagtcaccggtgtac |
38707659 |
T |
|
| Q |
255 |
cggtccatcggctaacaaccttagctatatggtctggtccaacagtttctgtcagcatcaagttatcatctttgtttccatcagtgctaccttcaagatt |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38707658 |
cggtccatcggctaacaaccttagctatatggtctggtccaacagtttctgtcagcatcaagttatcatctttgtttccatcagtgctaccttcaagatt |
38707559 |
T |
|
| Q |
355 |
ttttattgcattttccaccttttcaagatcataccacctctcagcctcctgtagtgcaaagaggagctcttcacgtatgtttcagccttcgaatctcatc |
454 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
38707558 |
ttttattgcattttccaccttttcaagatcataccacctctcagcctcctgtagtgcaaagaggagctcttcacgtatgtttcagccttcaaatctcatc |
38707459 |
T |
|
| Q |
455 |
aatcctctctttctctttgttatactgcatcttcagatgttgaagtttgtctcttaaattttcaagttc |
523 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
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|
| T |
38707458 |
aatcctctctttctctttgttatactgcatcttcagatgtcgaagcttgtctcttaaattttcaagttc |
38707390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 55 - 380
Target Start/End: Complemental strand, 10046065 - 10045741
Alignment:
| Q |
55 |
ttaccaacaccatttggaccaaggaataggaagggaccagttggttgttgaggtcttcttaaaccaactctcagatctcactacagccccagcaaaaact |
154 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||| ||||||||||||||| ||||||| || |||| ||||| || || |||||||||||||| | | || |
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|
| T |
10046065 |
ttaccgacaccagttggaccaaggaataggaaggaaccagttggttgttgtggtcttcctagaccagctctc-gaccttactacagccccagcgacagct |
10045967 |
T |
|
| Q |
155 |
ttaactgcttggtcttgtcccacaactctactgtgcaatttgtcaccaagtccaaccaacctttctttatcattttgcactagacgagtcaccggtgtac |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||| | |||||| |||| |||||||||||||||||||||||||||||||| ||| ||||||||| ||| ||| |
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|
| T |
10045966 |
ttaactgcttggtcttgtcccacaactctagtatgcaatctgtctccaagtccaaccaacctttctttatcattttggcctaaacgagtcactggtatac |
10045867 |
T |
|
| Q |
255 |
cggtccatcggctaacaaccttagctatatggtctggtccaacagtttctgtcagcatcaagttatcatctttgtttccatcagtgctaccttcaagatt |
354 |
Q |
| |
|
||||||||||||||||||||| ||| || || |||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||| |
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|
| T |
10045866 |
cggtccatcggctaacaacctcagcaatttgatctggtccaacagtttctgtcagcatcaagttctcacctttgttcccatcagtgctaccttcaagatt |
10045767 |
T |
|
| Q |
355 |
ttttattgcattttccaccttttcaa |
380 |
Q |
| |
|
|||||||||||||||||||| ||||| |
|
|
| T |
10045766 |
ttttattgcattttccacctcttcaa |
10045741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 380 - 523
Target Start/End: Complemental strand, 10045708 - 10045563
Alignment:
| Q |
380 |
agatcataccacctctcagcctcctgtagtgcaaagaggagctcttcacgtat--gtttcagccttcgaatctcatcaatcctctctttctctttgttat |
477 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||| ||| |
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|
| T |
10045708 |
agatcataccgcctctcagcctcttgtagtgcaaagaggagctcttcacgtttctgtttcagacttcgaatctcatcaatcctctctttctctttgatat |
10045609 |
T |
|
| Q |
478 |
actgcatcttcagatgttgaagtttgtctcttaaattttcaagttc |
523 |
Q |
| |
|
||| |||||||||| | ||||| |||||||||||||| |||||||| |
|
|
| T |
10045608 |
acttcatcttcagaggctgaagcttgtctcttaaattgtcaagttc |
10045563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 146; Significance: 1e-76; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 55 - 380
Target Start/End: Complemental strand, 45467918 - 45467594
Alignment:
| Q |
55 |
ttaccaacaccatttggaccaaggaataggaagggaccagttggttgttgaggtcttcttaaaccaactctcagatctcactacagccccagcaaaaact |
154 |
Q |
| |
|
|||||||||||| | ||||||||||||| ||||| ||||||||||||||| ||||||| ||||||| |||| ||||||| ||||||| |||||| | | |
|
|
| T |
45467918 |
ttaccaacaccagtcggaccaaggaataagaaggaaccagttggttgttggggtcttcctaaaccagctctt-gatctcaatacagcctcagcaacagca |
45467820 |
T |
|
| Q |
155 |
ttaactgcttggtcttgtcccacaactctactgtgcaatttgtcaccaagtccaaccaacctttctttatcattttgcactagacgagtcaccggtgtac |
254 |
Q |
| |
|
||||| ||||||||||||||||| |||||| |||||| | ||||||||||||||||||||||| |||| |||||||| | || | |||||| ||| ||| |
|
|
| T |
45467819 |
ttaaccgcttggtcttgtcccacgactctagtgtgcagtctgtcaccaagtccaaccaaccttgctttctcattttggccgagcctagtcactggtatac |
45467720 |
T |
|
| Q |
255 |
cggtccatcggctaacaaccttagctatatggtctggtccaacagtttctgtcagcatcaagttatcatctttgtttccatcagtgctaccttcaagatt |
354 |
Q |
| |
|
| ||||||||||||||||||| ||||| ||||| |||||||| ||||| |||| ||| ||||| ||||| |||| ||||||||||||||||||||||| |
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| T |
45467719 |
cagtccatcggctaacaacctcggctatttggtccggtccaactgtttccgtcaacattaagttctcatccgtgttcccatcagtgctaccttcaagatt |
45467620 |
T |
|
| Q |
355 |
ttttattgcattttccaccttttcaa |
380 |
Q |
| |
|
||| |||||| ||||||||| ||||| |
|
|
| T |
45467619 |
tttaattgcagtttccacctcttcaa |
45467594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 380 - 508
Target Start/End: Complemental strand, 45467561 - 45467431
Alignment:
| Q |
380 |
agatcataccacctctcagcctcctgtagtgcaaagaggagctcttcacgtatgt--ttcagccttcgaatctcatcaatcctctctttctctttgttat |
477 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
45467561 |
agatcataccgcctctctgcctcctgtagtgcaaagaggagctcttcacgtttctgcttcagccttcgaatctcatcaatcctctctttctctttactat |
45467462 |
T |
|
| Q |
478 |
actgcatcttcagatgttgaagtttgtctct |
508 |
Q |
| |
|
||| |||||||||| ||||||| |||||||| |
|
|
| T |
45467461 |
acttcatcttcagaggttgaagcttgtctct |
45467431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 55 - 229
Target Start/End: Original strand, 43064743 - 43064913
Alignment:
| Q |
55 |
ttaccaacaccatttggaccaaggaataggaagggaccagttggttgttgaggtcttcttaaaccaactctcagatctcactacagccccagcaaaaact |
154 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||| ||||||| |||| ||||||| ||||||| |||||| ||| |
|
|
| T |
43064743 |
ttaccaacaccaattggaccaaggaataggaagggacatgttggttgttgagctcttcctaaaccagctct-tgatctcaatacagcctcagcaagaaca |
43064841 |
T |
|
| Q |
155 |
ttaactgcttggtcttgtcccacaactctactgtgcaatttgtcaccaagtccaaccaacctttctttatcattt |
229 |
Q |
| |
|
|||| || ||||| |||||| ||||| ||||||||| | |||| |||||||| ||| |||||||| |||||| |
|
|
| T |
43064842 |
ttaattgtttggtattgtcctgcaact---ctgtgcaatctatcacaaagtccaatcaatctttctttctcattt |
43064913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 4e-27; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 55 - 316
Target Start/End: Original strand, 42449969 - 42450229
Alignment:
| Q |
55 |
ttaccaacaccatttggaccaaggaataggaagggaccagttggttgttgaggtcttcttaaaccaactctcagatctcactacagccccagcaaaaact |
154 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |||| |||| ||||||||||||| ||||||||||||| | |||| ||||| ||||| | |
|
|
| T |
42449969 |
ttaccaacaccagttggaccaaggaataggaaggaaccaattggatgttgaggtcttcctaaaccaactctccg-cctcaatacagtgttagcaacggca |
42450067 |
T |
|
| Q |
155 |
ttaactgcttggtcttgtcccacaactctactgtgcaatttgtcaccaagtccaaccaacctttctttatcattttgcact-agacgagtcaccggtgta |
253 |
Q |
| |
|
|| ||||| || ||||||||||| ||||| |||| || ||||||||||||||| ||||||||||| ||||||| |||| || || | ||| ||| || |
|
|
| T |
42450068 |
tttactgcatgatcttgtcccactactcttttgtgtaacctgtcaccaagtccaagaaacctttctttctcatttt-cactaagtcgggacactggtata |
42450166 |
T |
|
| Q |
254 |
ccggtccatcggctaacaaccttagctatatggtctggtccaacagtttctgtcagcatcaag |
316 |
Q |
| |
|
|| ||| || ||||||||||| | |||| |||||||| ||||||||| ||||| ||||||| |
|
|
| T |
42450167 |
cccgtcaataggctaacaaccaaacctattaggtctggttcaacagtttttgtcaacatcaag |
42450229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 55 - 230
Target Start/End: Original strand, 742713 - 742887
Alignment:
| Q |
55 |
ttaccaacaccatttggaccaaggaataggaagggaccagttggttgttgaggtcttcttaaaccaactctcagatctcactacagccccagcaaaaact |
154 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |||| |||| ||||||||||||| | ||||| ||||| | || | |||||| ||||| | |
|
|
| T |
742713 |
ttaccaacaccagttggaccaaggaataggaaggaaccaattggatgttgaggtcttcctgaaccagctctc-caccttaatacagcgttagcaacgtca |
742811 |
T |
|
| Q |
155 |
ttaactgcttggtcttgtcccacaactctactgtgcaatttgtcaccaagtccaaccaacctttctttatcatttt |
230 |
Q |
| |
|
|| |||||||| |||||||||||||||||| | ||||| ||||||||| ||||| ||||||||||| ||||||| |
|
|
| T |
742812 |
tttactgcttgatcttgtcccacaactctattatgcaacctgtcaccaattccaagaaacctttctttctcatttt |
742887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 382 - 472
Target Start/End: Original strand, 42450316 - 42450408
Alignment:
| Q |
382 |
atcataccacctctcagcctcctgtagtgcaaagaggagctcttcacgtatgt--ttcagccttcgaatctcatcaatcctctctttctcttt |
472 |
Q |
| |
|
||||| || |||||||||||||||||| | |||| |||||||||||| | | ||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
42450316 |
atcattccgcctctcagcctcctgtagagacaagataagctcttcacgtttctgcttcagcctttgaatctcatcaatcctcactttctcttt |
42450408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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