View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0684_low_62 (Length: 311)
Name: NF0684_low_62
Description: NF0684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0684_low_62 |
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Alignment Details
Target: chr5 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 7 - 231
Target Start/End: Original strand, 13496204 - 13496429
Alignment:
| Q |
7 |
gtaagtatagaaaaagaaaaacta-cagtgatgtatagttcatagactagaaattgtaaagaaatagggaaaatgcattagcttggtaccaatgagatcg |
105 |
Q |
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|||||||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13496204 |
gtaagtatagaaaaagaaaagctagcagtgatgtatagttcatagattagaaattgtaaagaaatagggaaaatgcattagcttggtaccaatgagatcg |
13496303 |
T |
|
| Q |
106 |
actactatgttcattaacattattacttccaactgctctagcattgcttccagcttgcagtacagtccacacgtcacttatgttgtcaaccttggcttct |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13496304 |
actactatgttcattaacattattacttccaactgctctagcattgcttccagcttgcagtacagtccacacgtcacttatgttgtcaaccttggcttct |
13496403 |
T |
|
| Q |
206 |
acaacaccaggtacatgatgatgtcc |
231 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
13496404 |
acaacaccaggtacatgatgatgtcc |
13496429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 7 - 231
Target Start/End: Complemental strand, 21721724 - 21721499
Alignment:
| Q |
7 |
gtaagtatagaaaaagaaaaacta-cagtgatgtatagttcatagactagaaattgtaaagaaatagggaaaatgcattagcttggtaccaatgagatcg |
105 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21721724 |
gtaagtatagaaaaagaaaaactagcagtgatgtatagttcatagactataaattgtaaagaaatagggaaaatgcattagcttggtaccaatgagatcg |
21721625 |
T |
|
| Q |
106 |
actactatgttcattaacattattacttccaactgctctagcattgcttccagcttgcagtacagtccacacgtcacttatgttgtcaaccttggcttct |
205 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21721624 |
actactatgttcattaacattattacttccaattgctctagcattgcttccagcttgcagtacagtccacacgtcacttatgttgtcaaccttggcttct |
21721525 |
T |
|
| Q |
206 |
acaacaccaggtacatgatgatgtcc |
231 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
21721524 |
acaacaccaggtacatgatgatgtcc |
21721499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 7 - 231
Target Start/End: Complemental strand, 21801460 - 21801235
Alignment:
| Q |
7 |
gtaagtatagaaaaagaaaaacta-cagtgatgtatagttcatagactagaaattgtaaagaaatagggaaaatgcattagcttggtaccaatgagatcg |
105 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21801460 |
gtaagtatagaaaaagaaaaactagcagtgatgtatagttcatagactataaattgtaaagaaatagggaaaatgcattagcttggtaccaatgagatcg |
21801361 |
T |
|
| Q |
106 |
actactatgttcattaacattattacttccaactgctctagcattgcttccagcttgcagtacagtccacacgtcacttatgttgtcaaccttggcttct |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
21801360 |
actactatgttcattaacattattacttccaactgctctagcattgcttccagcttgcagtacagtccacacgtcacttatgttgtccaccttggcttct |
21801261 |
T |
|
| Q |
206 |
acaacaccaggtacatgatgatgtcc |
231 |
Q |
| |
|
|||||||||||||||||||||||||| |
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|
| T |
21801260 |
acaacaccaggtacatgatgatgtcc |
21801235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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