View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0684_low_65 (Length: 307)

Name: NF0684_low_65
Description: NF0684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0684_low_65
NF0684_low_65
[»] chr5 (1 HSPs)
chr5 (1-286)||(10412680-10412964)


Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 10412680 - 10412964
Alignment:
1 aaatgagtcattcattttgacgcaaagaagtatttaggcagccataagagtacaaacacttacctaacaattagaatcaatttgtcttacttaatagagt 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
10412680 aaatgagtcattcattttgacgcaaagaagtatttaggtagccataagagtacaaacacttacctaacaattagaatcaatttgtcttacttaatagagt 10412779  T
101 cttaatgattgatattaccaaccaagttgtaccacatacattagagtatagcttgtcaatctgggtctgtctgtactggctgtggtactatatatctatg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
10412780 cttaatgattgatattaccaaccaagttgtaccacatacattagagtatagcttgtcaatctgggtctgtctgtactggctgtggtactagatatctatg 10412879  T
201 ttcatgaacttggcagattcgagggccaactatatgtttcatttgatggcattgcc-tttttatttattgtatatgaaatgatgatg 286  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
10412880 ttcatgaacttggcagattcgagggccaac--tatgtttcatttgatggcattgccttttttatttattgtatatgaaatgatgatg 10412964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1275 times since January 2019
Visitors: 4413