View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0684_low_69 (Length: 304)
Name: NF0684_low_69
Description: NF0684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0684_low_69 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 30 - 304
Target Start/End: Original strand, 27494682 - 27494956
Alignment:
| Q |
30 |
taactagtgtctaagcagatatttacaaagttggagaacnnnnnnntttcaataacgtcaaacctcatgctgaaaagattctacttagaagcatatgaat |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27494682 |
taactagtgtctaagcagatatttacaaagttggagaacaaaaaaatttcaataacgtcaaacctcatgctgaaaagattctacttagaagcatatgaat |
27494781 |
T |
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| Q |
130 |
agtttttaaatatcgttagcacgcccatcagattcatctttggacacaaagtgaacaatagccaaacagagttcacgattaagtagaaaagaaagaaata |
229 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27494782 |
agtttttaaatatcgttagcacgcccatcagattcaactttggacacaaagtgaacaatagccaaacagagttcacgattaagtagaaaagaaagaaata |
27494881 |
T |
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| Q |
230 |
aagcttctaaagtaaatatcgtaacacaaagccaaaccagataaaaataaacacatatcaaatcttataataaaa |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27494882 |
aagcttctaaagtaaatatcgtaacacaaagccaaaccagataaaaataaacacatatcaaatcttataataaaa |
27494956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 30 - 304
Target Start/End: Original strand, 27501340 - 27501614
Alignment:
| Q |
30 |
taactagtgtctaagcagatatttacaaagttggagaacnnnnnnntttcaataacgtcaaacctcatgctgaaaagattctacttagaagcatatgaat |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27501340 |
taactagtgtctaagcagatatttacaaagttggagaacaaaaaaatttcaataacgtcaaacctcatgctgaaaagattctacttagaagcatatgaat |
27501439 |
T |
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| Q |
130 |
agtttttaaatatcgttagcacgcccatcagattcatctttggacacaaagtgaacaatagccaaacagagttcacgattaagtagaaaagaaagaaata |
229 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27501440 |
agtttttaaatatcgttagcacgcccatcagattcaactttggacacaaagtgaacaatagccaaacagagttcacgattaagtagaaaagaaagaaata |
27501539 |
T |
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| Q |
230 |
aagcttctaaagtaaatatcgtaacacaaagccaaaccagataaaaataaacacatatcaaatcttataataaaa |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27501540 |
aagcttctaaagtaaatatcgtaacacaaagccaaaccagataaaaataaacacatatcaaatcttataataaaa |
27501614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 30 - 304
Target Start/End: Original strand, 27516132 - 27516406
Alignment:
| Q |
30 |
taactagtgtctaagcagatatttacaaagttggagaacnnnnnnntttcaataacgtcaaacctcatgctgaaaagattctacttagaagcatatgaat |
129 |
Q |
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|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27516132 |
taactagtgtctaagcagatatttacaaagttggagaacaaaaaaatttcaataacgtcaaacctcatgctgaaaagattctacttagaagcatatgaat |
27516231 |
T |
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| Q |
130 |
agtttttaaatatcgttagcacgcccatcagattcatctttggacacaaagtgaacaatagccaaacagagttcacgattaagtagaaaagaaagaaata |
229 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27516232 |
agtttttaaatatcgttagcacgcccatcagattcaactttggacacaaagtgaacaatagccaaacagagttcacgattaagtagaaaagaaagaaata |
27516331 |
T |
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| Q |
230 |
aagcttctaaagtaaatatcgtaacacaaagccaaaccagataaaaataaacacatatcaaatcttataataaaa |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27516332 |
aagcttctaaagtaaatatcgtaacacaaagccaaaccagataaaaataaacacatatcaaatcttataataaaa |
27516406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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