View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0684_low_7 (Length: 555)

Name: NF0684_low_7
Description: NF0684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0684_low_7
NF0684_low_7
[»] chr5 (1 HSPs)
chr5 (96-550)||(24638944-24639400)
[»] chr1 (1 HSPs)
chr1 (96-550)||(52491366-52491822)


Alignment Details
Target: chr5 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 96 - 550
Target Start/End: Original strand, 24638944 - 24639400
Alignment:
Q  96 attcattcccactttacaaatctgggtcttgtcctcatattgatgagccttttaactgtttcctcaatggtaggagagataataagtatgagaagttccg 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24638944 attcattcccactttacaaatctgggtcttgtcctcatattgatgagccttttaactgtttcctcaatggtaggagagataataagtatgagaagttccg 24639043  T
Q  196 gtggcaacccaagaattgcaacatgccaaggtatatatgatgatatcccgacaggaacgtcttttcccagccccaaagtcacttcggaaatatcttctag 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24639044 gtggcaacccaagaattgcaacatgccaaggtatatatgatgatatcccgacaggaacgtcttttcccagccccaaagtcacttcggaaatatcttctag 24639143  T
Q  296 aaaaacacagttttatgtcgtccagaagcatactttcatacaaaaacag--nnnnnnnnnnnnnnnncgtttgaaagtatacttctgaacacatgcggtt 393  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||||                  |||||||||||||||||||| ||||||||||||    
T  24639144 aaaaacacagttttatgccgtccagaagcatagtttcatacaaaaacagttttttttttttttttttcgtttgaaagtatacttctggacacatgcggtt 24639243  T
Q  394 ttttagaaaaacggggaaataactccatttcataatgagcaatatatgtaggaaacaatgtagaattgatatggggctaaaacaaagcatgaaaatatgg 493  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24639244 ttttagaaacacggggaaataactccatttcataatgagcaatatatgtaggaaacaatgtagaattgatatggggctaaaacaaagcatgaaaatatgg 24639343  T
Q  494 ctagcatagctgattctaggatgagacgactaagccgtaaattttgtctgtgctgct 550  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  24639344 ctagcatagctgattctaggatgagacgactaagccgtaaattttgtttgtgttgct 24639400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 96 - 550
Target Start/End: Complemental strand, 52491822 - 52491366
Alignment:
Q  96 attcattcccactttacaaatctgggtcttgtcctcatattgatgagccttttaactgtttcctcaatggtaggagagataataagtatgagaagttccg 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52491822 attcattcccactttacaaatctgggtcttgtcctcatattgatgagccttttaactgtttcctcaatggtaggagagataataagtatgagaagttccg 52491723  T
Q  196 gtggcaacccaagaattgcaacatgccaaggtatatatgatgatatcccgacaggaacgtcttttcccagccccaaagtcacttcggaaatatcttctag 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52491722 gtggcaacccaagaattgcaacatgccaaggtatatatgatgatatcccgacaggaacgtcttttcccagccccaaagtcacttcggaaatatcttctag 52491623  T
Q  296 aaaaacacagttttatgtcgtccagaagcatactttcatacaaaaacag--nnnnnnnnnnnnnnnncgtttgaaagtatacttctgaacacatgcggtt 393  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||||                  |||||||||||||||||||| ||||||||||||    
T  52491622 aaaaacacagttttatgccgtccagaagcatagtttcatacaaaaacagttttttttttttttttttcgtttgaaagtatacttctggacacatgcggtt 52491523  T
Q  394 ttttagaaaaacggggaaataactccatttcataatgagcaatatatgtaggaaacaatgtagaattgatatggggctaaaacaaagcatgaaaatatgg 493  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52491522 ttttagaaacacggggaaataactccatttcataatgagcaatatatgtaggaaacaatgtagaattgatatggggctaaaacaaagcatgaaaatatgg 52491423  T
Q  494 ctagcatagctgattctaggatgagacgactaagccgtaaattttgtctgtgctgct 550  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  52491422 ctagcatagctgattctaggatgagacgactaagccgtaaattttgtttgtgttgct 52491366  T

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