View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0684_low_70 (Length: 303)
Name: NF0684_low_70
Description: NF0684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0684_low_70 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 28 - 298
Target Start/End: Complemental strand, 50094866 - 50094596
Alignment:
| Q |
28 |
catatctgacatctttttccatttctctccaattactcttaccacatccgtaaatgaaatcccaatattagttttctttagattccgtcattaagaaaaa |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
50094866 |
catatctgacatctttttccatttctctccaattactcttaccacatccgtaaatgaaatcccaatattagttttctttagattctgtcattaagaaaaa |
50094767 |
T |
|
| Q |
128 |
gcagtgtttgaaattcattccatcaacagttttagacaattttacagaagaaaagtgatcatttccacaccaccggtatgtaaaacataaaacacacctc |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
50094766 |
gcagtgtttgaaattcattccatcaacagttttagacaattttatagaagaaaagtgatcatttccacgccaccggtatgtaaaacataaaacacacctc |
50094667 |
T |
|
| Q |
228 |
tctttcctttcgagaaaataacttgaatccagacaacacacttttgggagcatttggatccctttgcttct |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
50094666 |
tctttcctttcgagaaaataacttgaatccagacaacacactcttgggagcatttggatcccttttcttct |
50094596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 28 - 127
Target Start/End: Complemental strand, 7073921 - 7073822
Alignment:
| Q |
28 |
catatctgacatctttttccatttctctccaattactcttaccacatccgtaaatgaaatcccaatattagttttctttagattccgtcattaagaaaaa |
127 |
Q |
| |
|
|||| |||||| ||||||||||| ||||||| ||||||| |||| |||||||||||||| ||| ||||||||||||||||||| |||||||| ||||| |
|
|
| T |
7073921 |
catacctgacagatttttccatttttctccaagtactcttcccacgtccgtaaatgaaattccaggattagttttctttagattctgtcattaaaaaaaa |
7073822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 298
Target Start/End: Original strand, 35497817 - 35497904
Alignment:
| Q |
211 |
aacataaaacacacctctctttcctttcgagaaaataacttgaatccagacaacacacttttgggagcatttggatccctttgcttct |
298 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||| ||| |||||||||||| | || ||||| |||||||||||| ||| ||||| |
|
|
| T |
35497817 |
aacataaaacacacctctctttccatttgagaaaagaacatgaatccagacattcccctcttgggtgcatttggatcctttttcttct |
35497904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 126
Target Start/End: Original strand, 35497611 - 35497709
Alignment:
| Q |
28 |
catatctgacatctttttccatttctctccaattactcttaccacatccgtaaatgaaatcccaatattagttttctttagattccgtcattaagaaaa |
126 |
Q |
| |
|
|||| ||||||| |||||||| || ||||||| || || ||||||||||||||||||||||| ||||| |||||||| |||| ||| |||| |||| |
|
|
| T |
35497611 |
catacctgacatttttttccagttttctccaagtaactttgccacatccgtaaatgaaatcccaggattagctttctttatattctgtcgttaaaaaaa |
35497709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1729 times since January 2019
Visitors: 4429