View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0684_low_71 (Length: 301)
Name: NF0684_low_71
Description: NF0684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0684_low_71 |
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Alignment Details
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 44145456 - 44145656
Alignment:
| Q |
1 |
ctattaagtacagtggctctccacacttccttccaaaggtcttggcttcttcttccagatgattcaggagcatctttgctcttagtgtctctcaagtgaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||| |||| |||||||||||| | ||| |
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| T |
44145456 |
ctattaagtacagtggctctccacacttccttccaaaggtcttggcttcttctgtaggatgactcgagagcatcttcgctcctagtgtctctcaggagaa |
44145555 |
T |
|
| Q |
101 |
gagaaggtatgtgcatcaagagtagtttccatcatattttcaatgctaacaaaccataatgaaatgggaatgcttttaatttgttgaacttcaaagggat |
200 |
Q |
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|||| |||||| ||||||||||||||||||||||| ||| |||||| |||| |||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
44145556 |
gagatggtatgggcatcaagagtagtttccatcatgtttccaatgccaacataccataatgaaatgggaatgtttctaatttgttgaacttcaaagggat |
44145655 |
T |
|
| Q |
201 |
t |
201 |
Q |
| |
|
| |
|
|
| T |
44145656 |
t |
44145656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 44156516 - 44156316
Alignment:
| Q |
1 |
ctattaagtacagtggctctccacacttccttccaaaggtcttggcttcttcttccagatgattcaggagcatctttgctcttagtgtctctcaagtgaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||| |||| |||||||||||| | ||| |
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| T |
44156516 |
ctattaagtacagtggctctccacacttccttccaaaggtcttggcttcttctgtaggatgactcgagagcatcttcgctcctagtgtctctcaggagaa |
44156417 |
T |
|
| Q |
101 |
gagaaggtatgtgcatcaagagtagtttccatcatattttcaatgctaacaaaccataatgaaatgggaatgcttttaatttgttgaacttcaaagggat |
200 |
Q |
| |
|
|||| |||||| ||||||||||||||||||||||| ||| |||||| |||| |||||||||||||||||||| || |||||||||||||||||||||||| |
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| T |
44156416 |
gagatggtatgggcatcaagagtagtttccatcatgtttccaatgccaacataccataatgaaatgggaatgtttctaatttgttgaacttcaaagggat |
44156317 |
T |
|
| Q |
201 |
t |
201 |
Q |
| |
|
| |
|
|
| T |
44156316 |
t |
44156316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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