View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0684_low_72 (Length: 301)
Name: NF0684_low_72
Description: NF0684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0684_low_72 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 44145480 - 44145278
Alignment:
| Q |
1 |
tgtggagagccactgtacttaatagtgtgacgaatttcctttagataccagacatgaatatcttcccgagtcctgaccgaattaatctagcaagaaaggg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
44145480 |
tgtggagagccactgtacttaatagtgtgacgaatttcctttagataccagacatgaatatcttcccgagtcctgactgaattaatctagcaagaaaggg |
44145381 |
T |
|
| Q |
101 |
tgtaaaactggaaacactctgtccaaatgtggctactccattactctacctgtacagaggctgaaaattaatgttggtgtcggttgttttgaatgttgta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
44145380 |
tgtaaaactggaaacactctgtccaaatgtggctactccattactctacctgtacagaggctgaaaattaatgttggtgttggttgttttgaatgttgta |
44145281 |
T |
|
| Q |
201 |
ctg |
203 |
Q |
| |
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||| |
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| T |
44145280 |
ctg |
44145278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 44156492 - 44156610
Alignment:
| Q |
1 |
tgtggagagccactgtacttaatagtgtgacgaatttcctttagataccagacatgaatatcttcccgagtcctgaccgaattaatctagcaagaaaggg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||| ||||||||||| |||||||| |
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| T |
44156492 |
tgtggagagccactgtacttaatagtgtgacgaatttcctttagataccagacataaatatattccc-------gaccaaattaatctagaaagaaaggt |
44156584 |
T |
|
| Q |
101 |
tgtaaaactggaaacactctgtccaa |
126 |
Q |
| |
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||||||| |||||||||| ||||||| |
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| T |
44156585 |
tgtaaaattggaaacactttgtccaa |
44156610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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