View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0684_low_75 (Length: 290)
Name: NF0684_low_75
Description: NF0684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0684_low_75 |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 52 - 262
Target Start/End: Original strand, 1248984 - 1249194
Alignment:
| Q |
52 |
gtcctatccctcaagccattgcgaaacttcctcaccttaactttgtcctccttaactggaacagcctaaccggtcctatccccgattactttagcaagct |
151 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
1248984 |
gtcctatccctcaagccattgcgaaacttcctcaccttaactttgtcctccttaactggaacagcctaaccggtcctatccctgattactttagcaagct |
1249083 |
T |
|
| Q |
152 |
caccaatttagccactttagggcttaataacaaccatttaaccggtcaggttccggcttacctcggccaccttcctaagcttgtaggcctagatgtaagc |
251 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
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| T |
1249084 |
caccaatttagccactttagggcttaataacaaccatttaaccggtcgggttccggcttacctcggccgccttcctaagcttgtaggcctagatgtgagc |
1249183 |
T |
|
| Q |
252 |
cacaaccagct |
262 |
Q |
| |
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||||||||||| |
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|
| T |
1249184 |
cacaaccagct |
1249194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 52 - 229
Target Start/End: Complemental strand, 12079642 - 12079465
Alignment:
| Q |
52 |
gtcctatccctcaagccattgcgaaacttcctcaccttaactttgtcctccttaactggaacagcctaaccggtcctatccccgattactttagcaagct |
151 |
Q |
| |
|
||||||| |||||||||||||| | ||| ||||||||||| |||||||||||||| ||||||| |||||| ||||||||||| |||||||||||||| || |
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| T |
12079642 |
gtcctattcctcaagccattgcaagactgcctcaccttaaatttgtcctccttaattggaacaacctaactggtcctatccctgattactttagcaaact |
12079543 |
T |
|
| Q |
152 |
caccaatttagccactttagggcttaataacaaccatttaaccggtcaggttccggcttacctcggccaccttcctaa |
229 |
Q |
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|||||||||||||| |||||||||||||||||||| |||||||||| |||| ||||||||||||| ||||||||| |
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| T |
12079542 |
aaccaatttagccaccttagggcttaataacaaccaattaaccggtccaattccagcttacctcggccgccttcctaa |
12079465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 52 - 229
Target Start/End: Complemental strand, 12096282 - 12096105
Alignment:
| Q |
52 |
gtcctatccctcaagccattgcgaaacttcctcaccttaactttgtcctccttaactggaacagcctaaccggtcctatccccgattactttagcaagct |
151 |
Q |
| |
|
||||||| |||||||||||||| | ||| ||||||||||| |||||||||||||| ||||||| |||||| ||||||||||| |||||||||||||| || |
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| T |
12096282 |
gtcctattcctcaagccattgcaagactgcctcaccttaaatttgtcctccttaattggaacaacctaactggtcctatccctgattactttagcaaact |
12096183 |
T |
|
| Q |
152 |
caccaatttagccactttagggcttaataacaaccatttaaccggtcaggttccggcttacctcggccaccttcctaa |
229 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||||||| |||| ||||||||||||| ||||||||| |
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|
| T |
12096182 |
taccaatttagccaccttagggcttaataacaaccaattaaccggtccaattcctgcttacctcggccgccttcctaa |
12096105 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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