View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0684_low_79 (Length: 285)
Name: NF0684_low_79
Description: NF0684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0684_low_79 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 30 - 273
Target Start/End: Original strand, 38609972 - 38610215
Alignment:
| Q |
30 |
ccaagcaccgttcgtagtaaccattttttgtatcctaaattttcagaatcaaccgttaataaacttcaacaactaaaagtgttgcatgtgattatatgtt |
129 |
Q |
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| T |
38609972 |
ccaagcaccgttcgtagtaaccattttttggatcctaaattttcagaatcaaccgttaataaacttcaacaactaaaagtgttgcatgtgattatatgtt |
38610071 |
T |
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| Q |
130 |
gagaagataagagcaaatacattaccatgaccacaaccttttggaaatactcacaggccttgtcaagataaccctctgcctcactgaaatctggagttag |
229 |
Q |
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| T |
38610072 |
gagaagataagagcaaatacattaccatgaccacagccttttggaaatactcacaggccttgtcaagataaccctctgcctcactgaaatctggagttag |
38610171 |
T |
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| Q |
230 |
aagtccataagacatgtggcctttccccaaacactaaagagtat |
273 |
Q |
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| T |
38610172 |
aagtccataagacatgttgcctttccccaaacactaaagagtat |
38610215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 71 - 271
Target Start/End: Original strand, 38605448 - 38605648
Alignment:
| Q |
71 |
ttcagaatcaaccgttaataaacttcaacaactaaaagtgttgcatgtgattatatgttgagaagataagagcaaatacattaccatgaccacaaccttt |
170 |
Q |
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||||||||| || |||||||||||||| ||||| ||||| |||||| | |||||||| |||||||||||||||||||||||||| | |||| | || |
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| T |
38605448 |
ttcagaatccgccattaataaacttcaagaactacaagtgcagcatgtcaatatatgttaagaagataagagcaaatacattaccacgtccacggctttc |
38605547 |
T |
|
| Q |
171 |
tggaaatactcacaggccttgtcaagataaccctctgcctcactgaaatctggagttagaagtccataagacatgtggcctttccccaaacactaaagag |
270 |
Q |
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| T |
38605548 |
tggaaatactcataggccttgtcaaaatgaccctttgcatcactgagatcaggagttagaaatccacaagacgtaagggcattccccaagcaccaaagag |
38605647 |
T |
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| Q |
271 |
t |
271 |
Q |
| |
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| |
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| T |
38605648 |
t |
38605648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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