View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0684_low_8 (Length: 545)
Name: NF0684_low_8
Description: NF0684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0684_low_8 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 501; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 26 - 545
Target Start/End: Original strand, 38816155 - 38816675
Alignment:
| Q |
26 |
atcacatgcacaattatcataactcagtgaaagaaaatgcaagaaaaggtatattgtatcctttgaacctcaatttctcacctacccaaagaaacctcat |
125 |
Q |
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| T |
38816155 |
atcacatgcacaattatcataactcagtgaaagaaaatgcaagaaaaggtatattgtatcctttgaacctcaatttctcacctacccaaagaaacctcat |
38816254 |
T |
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| Q |
126 |
acaactatatacccttctctaacagacaaagtcagtttaatt-acataaggccgtgatgtataccaactgtaaccacaaaaagtagccaactgcaaaatc |
224 |
Q |
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| T |
38816255 |
acaactatatacccttctctaacagacaaagtcagtttaatttacataaggccgtgatgtataccaactgtaaccacaaaaagtagccaactgcaaaatc |
38816354 |
T |
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| Q |
225 |
tagacaaaatgtaaaaccctaagaacaaggtttaattaaacctaaacaacagcataccatttgtccctttctcacccacccaagcattcctccttcatct |
324 |
Q |
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| T |
38816355 |
tagacaaaatgtaaaaccctaagaacaaggtttaattaaacctaaacaacagcataccatttgtccctttctcacccacccaagcattcctccttcatct |
38816454 |
T |
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| Q |
325 |
ttagaagggcaaattgaatgttccacagcaagatcactcaaatcttcacctgaacacacaacaagaaagccttagaaagaaacttcacaaataaatatct |
424 |
Q |
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| T |
38816455 |
ttagaagggcaaattgaatgttccacagcaagatcactcaaatcttcacctgaacacacaacaagaaagccttagaaagaaacttcacaaataaatatct |
38816554 |
T |
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| Q |
425 |
cccataaatatctagcaccgagacttcatattaaaggtgtgtccagtgtccaacagatgtcagtctccaacactatcacgattcacgaatataactatga |
524 |
Q |
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| T |
38816555 |
cccataaatatctagcaccgagacttcatattaaaggtgtgtgcagtgtccaacagatgtcagtctccaacactatcacgattcacgaatataactatga |
38816654 |
T |
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| Q |
525 |
tgcacggacactcctcgaatt |
545 |
Q |
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| T |
38816655 |
atcacggacactcctcgaatt |
38816675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 238 - 387
Target Start/End: Original strand, 38821782 - 38821928
Alignment:
| Q |
238 |
aaaccctaagaacaaggtttaattaaacctaaacaacagcataccatttgtccctttctcacccacccaagcattcctccttcatctttagaagggcaaa |
337 |
Q |
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|||||||||||||||| ||||| ||| ||||||| || ||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||| | |
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| T |
38821782 |
aaaccctaagaacaagatttaagcaaatctaaacatca---taccatttgtccctttctcacccacccaagccttcctccttcttctttagatgggcaca |
38821878 |
T |
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| Q |
338 |
ttgaatgttccacagcaagatcactcaaatcttcacctgaacacacaaca |
387 |
Q |
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| T |
38821879 |
ccgaatagtccacagcaagatcgctcaaatcttcacctggacacacaaca |
38821928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 458 - 496
Target Start/End: Original strand, 35665559 - 35665597
Alignment:
| Q |
458 |
aaggtgtgtccagtgtccaacagatgtcagtctccaaca |
496 |
Q |
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| T |
35665559 |
aaggtgtgtccagtgtccaacacatgtcagtttccaaca |
35665597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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