View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0684_low_81 (Length: 285)
Name: NF0684_low_81
Description: NF0684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0684_low_81 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 64 - 285
Target Start/End: Original strand, 29725143 - 29725365
Alignment:
| Q |
64 |
ctttttatattttatttacagggtacacacttccttgaaaccaaagcaggaaaataatatatgtcatatgcagtatctgacatattagagagctaaataa |
163 |
Q |
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| T |
29725143 |
ctttttatattttatttacagggtacacacttccttgaaaccaaagcaggaaaataatatatgtgatatgcagtatctgacatattagagagctaaataa |
29725242 |
T |
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| Q |
164 |
attctgtaacgtgacattttctacttggagagtgacatgtttcagcctatagcattttgtatttctcagtgtattgttgcatggtttgatgtattgcttg |
263 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29725243 |
attctgtaacatgacattttctacttggagagtgacatgtttcagcctatagcattttgtatttctcagtgtattgttgcatggtttgatgtattgcttg |
29725342 |
T |
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| Q |
264 |
atactt-taagataataatcatt |
285 |
Q |
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|||||| |||||||||||||||| |
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| T |
29725343 |
atacttataagataataatcatt |
29725365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 78 - 241
Target Start/End: Original strand, 29707262 - 29707430
Alignment:
| Q |
78 |
tttacagggtacacacttccttgaaaccaaagcaggaaaataatata-----tgtcatatgcagtatctgacatattagagagctaaataaattctgtaa |
172 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||| | ||| ||||||||||| | ||| |||||||||||||||||||| ||||| |
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| T |
29707262 |
tttacagggtacacacttccttgaaacctaagcaggaaaataatacaatacatgtgatatgcagtatttaacagattagagagctaaataaattatgtaa |
29707361 |
T |
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| Q |
173 |
cgtgacattttctacttggagagtgacatgtttcagcctatagcattttgtatttctcagtgtattgtt |
241 |
Q |
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| T |
29707362 |
catggcattttctacttggagagtggcatgtgtcagcctgtagcattttgtattactcagtgtattgtt |
29707430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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