View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0684_low_84 (Length: 280)
Name: NF0684_low_84
Description: NF0684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0684_low_84 |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 7e-95; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 52 - 246
Target Start/End: Original strand, 32853657 - 32853852
Alignment:
| Q |
52 |
catcatctcctgcagaaaaattaattccctttattctttcatcatcttctttcttcttatgccaacaatctctacttgaatggttgggaattttgcatct |
151 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32853657 |
catcatcttctgcagaaaaattaattccctttattctttcatcatcttctttcttcttatgccaacaatctctacttgaatggttgggaattttgcatct |
32853756 |
T |
|
| Q |
152 |
agtacatctaaagcgacaatcttttgattcatgtccagattttttgc-aaataaagcaataagaattagaattacctcgtatcctctctgctcctc |
246 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
32853757 |
agtacatctaaagcgacaatcttttgattcatgtccagattttttgcaaaataaagcaataagaattagaattacctcgtatcctttctcctcctc |
32853852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 52 - 246
Target Start/End: Original strand, 37176793 - 37176987
Alignment:
| Q |
52 |
catcatctcctgcagaaaaattaattccctttattctttcatcatcttctttcttcttatgccaacaatctctacttgaatggttgggaattttgcatct |
151 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37176793 |
catcatcttttgcagaaaaattaattccctttattctttcatcattttctttcttcttatgccaacaatctctacttgaatggttgggaattttgcatct |
37176892 |
T |
|
| Q |
152 |
agtacatctaaagcgacaatcttttgattcatgtccagattttttgcaaataaagcaataagaattagaattacctcgtatcctctctgctcctc |
246 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
37176893 |
agtacatctaaagcgacaatcttttgattcatgtccagattttttgcaaataaagcaataagaattagaattacctcgtatcctttctcctcctc |
37176987 |
T |
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