View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0684_low_89 (Length: 273)
Name: NF0684_low_89
Description: NF0684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0684_low_89 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 2820091 - 2820342
Alignment:
| Q |
1 |
gttgtccattgtagagtattatcactcaaaggcagcctcggaaggattgaaaaccgtttcagctgatttgaccgttgatgggattcaaaatgagataagc |
100 |
Q |
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|||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2820091 |
gttgtccattgtagagtattattgttcaaaggcagccccggagggattgaaaaccgtttcagctgatttgaccgttgatgggattcaagatgagataagc |
2820190 |
T |
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| Q |
101 |
caacaagtaatggaacttgtgctaaacttattgctaaccctgtcatccccagattcttgtatgaaaatagtggatcacatcagctaagaaaatggttaat |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2820191 |
caacaagtaatgtaacttgtgctaaacttattgctaaccctgtcatccccagattcttgtatgaaaatagtggatcacatcagctaagaaaatggttaat |
2820290 |
T |
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| Q |
201 |
tcattatcattcccccaatcttttgttttgataatcaatgtggttttattga |
252 |
Q |
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||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
2820291 |
tcattatcattcccctaatcttttgttttgataatccatgtggttttattga |
2820342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 2827261 - 2827392
Alignment:
| Q |
1 |
gttgtccattgtagagtattatcactcaaaggcagcctcggaaggattgaaaaccgtttcagctgatttgaccgttgatgggattcaaaatgagataagc |
100 |
Q |
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|||| |||||||| | ||||||| |||||||||||||| ||||||| |||||||||||||||||||||||| | || |||||||||||||||||||||| |
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| T |
2827261 |
gttgaccattgtaaaatattatcgttcaaaggcagcctcagaaggatcgaaaaccgtttcagctgatttgacagctgctgggattcaaaatgagataagc |
2827360 |
T |
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| Q |
101 |
caacaagtaatggaacttgtgctaaacttatt |
132 |
Q |
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| T |
2827361 |
caacaagtaatgtaacttgtgccaaacttatt |
2827392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 132 - 250
Target Start/End: Original strand, 2827550 - 2827672
Alignment:
| Q |
132 |
tgctaaccctgtca----tccccagattcttgtatgaaaatagtggatcacatcagctaagaaaatggttaattcattatcattcccccaatcttttgtt |
227 |
Q |
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|||||||||||||| ||||| |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||| |
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| T |
2827550 |
tgctaaccctgtcaattgtccccggattcttgtatgaaaatactggatcacatcagctaggaaaatggttaattcattatcatttccctaatcttttgtt |
2827649 |
T |
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| Q |
228 |
ttgataatcaatgtggttttatt |
250 |
Q |
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|| |||||| ||||||||||||| |
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| T |
2827650 |
ttaataatccatgtggttttatt |
2827672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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