View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0684_low_9 (Length: 544)
Name: NF0684_low_9
Description: NF0684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0684_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 382; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 72 - 539
Target Start/End: Original strand, 25356752 - 25357219
Alignment:
| Q |
72 |
atcatcatcatattcatcatcgttaatcacaattggactggctgcatctttcccaggaccatcatatacttttttgaaggctaaggttctcaatctatta |
171 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
25356752 |
atcatcatcatattcatcatcgttaatcaaaattggactggctgcatctttcccaggaccatcatatacttttttgaaggccaaggttctcaatctatta |
25356851 |
T |
|
| Q |
172 |
ctagtcctcctcaccacctttaaatccaactttcttgtaannnnnnnnnnnnnnnnnnnnnnctacaatatccaagagaggtgttacataaagtccatta |
271 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |
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| T |
25356852 |
ctagtcctcctcaccacctttaaatccaactttcttgtaacttttttctttcttttcttttcctacaacatccaagagaggtgttacataaagtccatta |
25356951 |
T |
|
| Q |
272 |
ttaagtaactaataagaattgaaataaaatgaagatatgaagactcacataagatggtaaagggttagggtcagcagttgttggtacaaggttcactaca |
371 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25356952 |
ttaagtaactaataagaattgaaataaaatgaagatatgaagactcacataagatggtaaagggttagggtcagcagttgttggtacaaggttcactaca |
25357051 |
T |
|
| Q |
372 |
gaaatcggctccacaaacgtgtttttagccgacatatttccatcagcagacactttttcattctggttgagaggctctccatcaacaagcacttctggtt |
471 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25357052 |
gaaatcggctccacaaacgtgtttttagccgacatatttccatcagcagacactttttcattctggttgagaggctctccatcaacaagcacttctggtt |
25357151 |
T |
|
| Q |
472 |
gttgttgctctaattctttggtaatcttataacatgcatcgcgtctttttgtttttctctctgctgct |
539 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
25357152 |
gttgttgatctaattctttggtaatcttataacatgcatcgcgtctttttgtttttctctttgctgct |
25357219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 73 - 539
Target Start/End: Original strand, 25352084 - 25352557
Alignment:
| Q |
73 |
tcatcatcatattcatcatcgttaatcacaattggactggctgcatctttcccaggaccatcatatacttttttgaaggctaaggttctcaatctattac |
172 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| | || ||||||| | |||||||||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
25352084 |
tcatcatcataatcatcatcgttaatcacaattgggcaggttgcatctcttccaggaccattatatacttttttgaaggccaaggttctcaatctattac |
25352183 |
T |
|
| Q |
173 |
tagtcctcctcaccacctttaaatccaactttcttgtaannnnnnnnnnnnnnnnnnnnnnctacaatatccaagagaggtgttacataaagtccattat |
272 |
Q |
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|||||||||| ||| || ||||||||| |||||||||| ||||||||||||||||| |||||||| ||||| |||||| |
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| T |
25352184 |
tagtcctccttaccttctataaatccaattttcttgtaacctttttctttcttttcttttcctacaatatccaagagatgtgttacagaaagtacattat |
25352283 |
T |
|
| Q |
273 |
taagtaactaa-taagaattgaaataaaatgaagatatgaagactcacataagatggtaaagg---gttagggtcagcagttgttggtacaaggttcact |
368 |
Q |
| |
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| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||| ||| || |
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| T |
25352284 |
atattaagtaactaagaattgaaataaaatgaagatatgaagactcacataagatggtacaggcgggttagggtcagcagcacttggtacatggtacata |
25352383 |
T |
|
| Q |
369 |
acagaaatcggctccacaaacgtgtttttagccgacatatttccatcagcagacactttttcattctggttgagaggctctccatcaacaagcacttctg |
468 |
Q |
| |
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||||||| ||||||||||| |||||||| ||| |||||| |||| ||||| |||| || ||| |||||||||||||||||||||||||||||||||| |
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| T |
25352384 |
gcagaaattggctccacaaatgtgtttttcgccaacatatcgtcatcggcagatacttcttgattatggttgagaggctctccatcaacaagcacttctg |
25352483 |
T |
|
| Q |
469 |
gttgttgttgctctaattctttggtaatcttataacatgcatcgcg---tctttttgtttttctctctgctgct |
539 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
25352484 |
gttgttgttgctctaattcttctgtcttcttataacatgcatcgcgtcttctttttgtttttctctttgctgct |
25352557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 236 - 375
Target Start/End: Original strand, 25349711 - 25349846
Alignment:
| Q |
236 |
acaatatccaagagaggtgttacataaagtccattattaagtaactaataagaattgaaataaaatgaagatatgaagactcacataagatggtaaaggg |
335 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25349711 |
acaatatccaagaaaggtgttacataaagtccattattaagtaactaataagaattgaaataaaatgaagatatgaagactcacataagatggtaaaggg |
25349810 |
T |
|
| Q |
336 |
ttagggtcagcagttgttggtacaaggttcactacagaaa |
375 |
Q |
| |
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| |||||||| ||||||||||||| || |||||||||| |
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| T |
25349811 |
t--gggtcagc--ttgttggtacaagatttactacagaaa |
25349846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 72 - 200
Target Start/End: Original strand, 25349545 - 25349672
Alignment:
| Q |
72 |
atcatcatcatattcatcatcgttaatcacaattggactggctgcatctttcccaggaccatcatatacttttttgaaggctaaggttctcaatctatta |
171 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| | ||||||| |||||| |||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
25349545 |
atcatcatcataatcatcatcgttaatcacaattggactagttgcatctctcccag-accatcatatacttttttgaaggccaaggttctcaatctatta |
25349643 |
T |
|
| Q |
172 |
ctagtcctcctcaccacctttaaatccaa |
200 |
Q |
| |
|
|||||||||||||||| |||||||||||| |
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|
| T |
25349644 |
ctagtcctcctcaccatctttaaatccaa |
25349672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 72 - 179
Target Start/End: Original strand, 25361421 - 25361528
Alignment:
| Q |
72 |
atcatcatcatattcatcatcgttaatcacaattggactggctgcatctttcccaggaccatcatatacttttttgaaggctaaggttctcaatctatta |
171 |
Q |
| |
|
||||||||| || |||| ||| |||||||| ||||||||| ||||||| ||||||||||||||||| | ||||||||| |||||||||||||||| | |
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|
| T |
25361421 |
atcatcatcgtaatcattatcattaatcacgattggactgcttgcatctctcccaggaccatcatatgatcttttgaaggtcaaggttctcaatctatca |
25361520 |
T |
|
| Q |
172 |
ctagtcct |
179 |
Q |
| |
|
|||||||| |
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|
| T |
25361521 |
ctagtcct |
25361528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 234 - 306
Target Start/End: Original strand, 25361580 - 25361649
Alignment:
| Q |
234 |
ctacaatatccaagagaggtgttacataaagtccattattaagtaactaataagaattgaaataaaatgaaga |
306 |
Q |
| |
|
||||||||||||| |||| |||||||||||||| |||||| |||||| || |||||||||||||||||||| |
|
|
| T |
25361580 |
ctacaatatccaatagagatgttacataaagtctattattgagtaac---tacgaattgaaataaaatgaaga |
25361649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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