View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0684_low_99 (Length: 257)
Name: NF0684_low_99
Description: NF0684
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0684_low_99 |
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Alignment Details
Target: chr2 (Bit Score: 177; Significance: 2e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 21 - 246
Target Start/End: Original strand, 16254345 - 16254568
Alignment:
| Q |
21 |
acatcatctgttatttttt-agtttgattgcaactttgttgttgattctgttaacaccatctccattccataaaacgagattagagataccatttttaga |
119 |
Q |
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| T |
16254345 |
acatcatctgttatttttttagtttgattgcaactttgttgttgattctgttaacaccatctccattccataaaacgagattagagataccattt---ga |
16254441 |
T |
|
| Q |
120 |
tgtaaggatctattgtcaactcgtaataattttattgtgagctatgtcggatgcaagcaaatatggtgactaaaagtatagctaaagctgccttatctca |
219 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
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| T |
16254442 |
tgtaaggatatattgtcaactcgtaataattttattgtgagctatgtcggatgcaagcaaatatggtgactaaaagtataaataaagctaccttatctca |
16254541 |
T |
|
| Q |
220 |
tcttaacccctacaattttgatgatgt |
246 |
Q |
| |
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||||| |||| |||||||| ||||||| |
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| T |
16254542 |
tcttagcccccacaatttttatgatgt |
16254568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 159
Target Start/End: Original strand, 17247351 - 17247407
Alignment:
| Q |
103 |
gagataccatttttagatgtaaggatctattgtcaactcgtaataattttattgtga |
159 |
Q |
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| T |
17247351 |
gagatatcatttctagatgtaaggatctattgtcatctcgcaataattttattgtga |
17247407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 103 - 167
Target Start/End: Original strand, 19671170 - 19671234
Alignment:
| Q |
103 |
gagataccatttttagatgtaaggatctattgtcaactcgtaataattttattgtgagctatgtc |
167 |
Q |
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| T |
19671170 |
gagatatcatttctagatgtaaggatctattgtcatctcgcaataattttattatgagctatgtc |
19671234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 58 - 167
Target Start/End: Original strand, 43427366 - 43427475
Alignment:
| Q |
58 |
ttgttgattctgttaacaccatctccattccataaaacgagattagagataccatttttagatgtaaggatctattgtcaactcgtaataattttattgt |
157 |
Q |
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|||||||| || ||||| ||| ||| | |||| | || ||| || |||||| |||| |||||||||| ||||||||||| |||| |||||||||||||| |
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| T |
43427366 |
ttgttgatactattaactccaactctactccaaacaatgagtttggagatattatttctagatgtaagaatctattgtcatctcgcaataattttattgt |
43427465 |
T |
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| Q |
158 |
gagctatgtc |
167 |
Q |
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|||||||||| |
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| T |
43427466 |
gagctatgtc |
43427475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 182
Target Start/End: Complemental strand, 4048587 - 4048507
Alignment:
| Q |
103 |
gagataccatttttagatgtaaggatctattgtcaactcgtaataattttattgtgagctatgtc-ggatgcaagcaaata |
182 |
Q |
| |
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||||||| ||| ||||||| |||| || ||||||||||| |||||||||||||| || |||||| ||| ||||||||||| |
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| T |
4048587 |
gagatacaattagtagatgtcaggaccttttgtcaactcgcaataattttattgttagttatgtcaggaggcaagcaaata |
4048507 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 160
Target Start/End: Complemental strand, 3898045 - 3897996
Alignment:
| Q |
111 |
atttttagatgtaaggatctattgtcaactcgtaataattttattgtgag |
160 |
Q |
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|||| |||||||||||||||||||||| ||| |||||||||||||||||| |
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| T |
3898045 |
atttatagatgtaaggatctattgtcatctcataataattttattgtgag |
3897996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 167
Target Start/End: Original strand, 31403776 - 31403827
Alignment:
| Q |
116 |
tagatgtaaggatctattgtcaactcgtaataattttattgtgagctatgtc |
167 |
Q |
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|
|||||||||||||||||| ||| ||| |||||||||||||||||||||||| |
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| T |
31403776 |
tagatgtaaggatctattatcatctcacaataattttattgtgagctatgtc |
31403827 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 160
Target Start/End: Complemental strand, 3884195 - 3884146
Alignment:
| Q |
111 |
atttttagatgtaaggatctattgtcaactcgtaataattttattgtgag |
160 |
Q |
| |
|
|||| |||||||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
3884195 |
atttctagatgtaaggatctattgtcatctcacaataattttattgtgag |
3884146 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 111 - 166
Target Start/End: Complemental strand, 42304997 - 42304942
Alignment:
| Q |
111 |
atttttagatgtaaggatctattgtcaactcgtaataattttattgtgagctatgt |
166 |
Q |
| |
|
|||| |||||||| ||||||||||||| ||| |||||||||||| |||||||||| |
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| T |
42304997 |
atttctagatgtatggatctattgtcatctcacaataattttattttgagctatgt |
42304942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 111 - 160
Target Start/End: Complemental strand, 32230119 - 32230070
Alignment:
| Q |
111 |
atttttagatgtaaggatctattgtcaactcgtaataattttattgtgag |
160 |
Q |
| |
|
|||||||||||||||||||||||| || | || ||||||||||||||||| |
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| T |
32230119 |
atttttagatgtaaggatctattggcagcccgcaataattttattgtgag |
32230070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 100 - 137
Target Start/End: Complemental strand, 37729648 - 37729611
Alignment:
| Q |
100 |
ttagagataccatttttagatgtaaggatctattgtca |
137 |
Q |
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|||||||||| |||| |||||||||||||||||||||| |
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|
| T |
37729648 |
ttagagatacaatttctagatgtaaggatctattgtca |
37729611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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