View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0686-Insertion-10 (Length: 254)
Name: NF0686-Insertion-10
Description: NF0686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0686-Insertion-10 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 73 - 254
Target Start/End: Original strand, 38965050 - 38965228
Alignment:
| Q |
73 |
tcaatctgacattttctattattatttacatcatcgcaaaatatannnnnnngcataaatccatgcacaacaaatataag-tagtgtatttgtctgatga |
171 |
Q |
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| T |
38965050 |
tcaatctgacattttctattattatttacatcatcacaaaatatattttttttcataaatccatgcacaacaaatatcatatatagtatttgtctgatga |
38965149 |
T |
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| Q |
172 |
tacatcctcagtttcacaatagtacgtaacactctcatatttgtcaagnnnnnnntacagcagggtatcatttatcatatgga |
254 |
Q |
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| T |
38965150 |
tacatcctcagtttcacaata----gtaacactctcatacttgtcaagaaaaaaatacagcagggtatcatttatcatatgga |
38965228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 38965019 - 38965063
Alignment:
| Q |
11 |
taacatataagattttcacaacttttactaatcaatctgacattt |
55 |
Q |
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| T |
38965019 |
taacatataagattttcacaacttttactaatcaatctgacattt |
38965063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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