View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0686-Insertion-13 (Length: 108)

Name: NF0686-Insertion-13
Description: NF0686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0686-Insertion-13
NF0686-Insertion-13
[»] chr5 (2 HSPs)
chr5 (8-108)||(15201520-15201620)
chr5 (8-107)||(15208468-15208567)


Alignment Details
Target: chr5 (Bit Score: 97; Significance: 3e-48; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 3e-48
Query Start/End: Original strand, 8 - 108
Target Start/End: Complemental strand, 15201620 - 15201520
Alignment:
Q  8 aaaagcagggacaatatcaaccatagctgaagccaaagtgggagaactgaatctaattccagaagccattaacgtctgagttgcagttctgcacatgtag 107  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15201620 aaaagcagggacaatatcaaccatagctgaagccaaagtaggagaactgaatctaattccagaagccattaacgtctgagttgcagttctgcacatgtag 15201521  T
Q  108 g 108  Q
    |    
T  15201520 g 15201520  T

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Target: chr5; HSP #2
Raw Score: 64; E-Value: 2e-28
Query Start/End: Original strand, 8 - 107
Target Start/End: Complemental strand, 15208567 - 15208468
Alignment:
Q  8 aaaagcagggacaatatcaaccatagctgaagccaaagtgggagaactgaatctaattccagaagccattaacgtctgagttgcagttctgcacatgtag 107  Q
    |||||||||||||| || ||| |||||||||||||| |  |||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||||    
T  15208567 aaaagcagggacaagattaacaatagctgaagccaacgcaggagaactgaatttaattccagaagtcattaacgtctgagttgcagttctgcacaagtag 15208468  T

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