View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0686-Insertion-3 (Length: 669)
Name: NF0686-Insertion-3
Description: NF0686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0686-Insertion-3 |
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Alignment Details
Target: chr2 (Bit Score: 504; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 8 - 555
Target Start/End: Complemental strand, 4012748 - 4012201
Alignment:
| Q |
8 |
ttagaaccctgattatcacttgtttgaatttgctaattgattttattcgattttatgatctctgcaatttttatctcatgattcgttgaaaattggttta |
107 |
Q |
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| T |
4012748 |
ttagaaccctgattatcacttgtttgaatttgctaattgattttattcgattttatgatctctgcaatttttatctcatgattcgttgaaaattggttta |
4012649 |
T |
|
| Q |
108 |
tgaaatctgaaagttttttgttgaatacgatcatacgaatccaactagataaaaatcgttaattttcgtattctgtagagagagaatttcgaataaaatc |
207 |
Q |
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| T |
4012648 |
tgaaatttgaaagttttttgttgaatatgatcatacgaatccaactagataaaaatcgttaattttcgtattctgtagagagataatttcgaataaaatc |
4012549 |
T |
|
| Q |
208 |
aattaaaatctttagggtttatgtgaaaattgaattcatgatttcgattcaaattaattggggattttgttaccaaacgatcaaaaatacgattatcatt |
307 |
Q |
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| T |
4012548 |
aattaaaatctttagggtttatgtgaaaattgaattcatgatttcgattcaaattaattggggattttgttaccaaacgatcaaaaatacgattatcatt |
4012449 |
T |
|
| Q |
308 |
gaaaataataattttcttttgaaaatcgattcatgaattcatgttgttttttcatgaaatacatccggttctcttttgtgttcaataactagattgtgat |
407 |
Q |
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| T |
4012448 |
gaaaaccataattttcttttgaaaatcgattcatgaattcatgttgttttttcatgaaatacatctggttctcttttgtgttcaataactagattatgat |
4012349 |
T |
|
| Q |
408 |
gtttttccttgcgattcttgtgtgtggtgaattggaaattgaattccggtcgaaacccatcaaaaatcgcataaaaccattgagttttgagtgtaaaccc |
507 |
Q |
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| T |
4012348 |
gtttttccttgcgattcttgtgtgtggtgaattggaaattgaattccggtcgaaacccatcaaaaattgcataaaaccattgagttttgagtgaaaaccc |
4012249 |
T |
|
| Q |
508 |
gttttcaaaactcagacccgtcccgacccggtttctggtcgcaggttg |
555 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4012248 |
attttcaaaactcagacccgtcccgacccggtttctggtcgcgggttg |
4012201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 599 - 657
Target Start/End: Complemental strand, 4012200 - 4012142
Alignment:
| Q |
599 |
ctctcagccagagagagtgcaggcgcgtgtggcctctgtgttggtccgaattcgattcc |
657 |
Q |
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| T |
4012200 |
ctctcagccagagagagtgcaggcgcgtgtggcctctgtgttggttcgaattcgattcc |
4012142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 209
Target Start/End: Original strand, 4649248 - 4649317
Alignment:
| Q |
140 |
atacgaatccaactagataaaaatcgttaattttcgtattctgtagagagagaatttcgaataaaatcaa |
209 |
Q |
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|||| |||||||| ||||||||||||||| ||||||| | ||| ||| |||||||||||||||||||| |
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| T |
4649248 |
atacaaatccaacgagataaaaatcgttatttttcgttgttggtatagatagaatttcgaataaaatcaa |
4649317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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