View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0686-Insertion-4 (Length: 666)
Name: NF0686-Insertion-4
Description: NF0686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0686-Insertion-4 |
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Alignment Details
Target: chr6 (Bit Score: 561; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 561; E-Value: 0
Query Start/End: Original strand, 8 - 625
Target Start/End: Original strand, 1442558 - 1443181
Alignment:
| Q |
8 |
gtagtttctccaaaggtggcaatatcttgaatttcctaatataagggttccatgctacgagattttgatgttccttattacagtcaaatgtgtcgaaaaa |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
1442558 |
gtagtttctccaaaggtggcaatatcttgaatttcctaatataagggttccatgctacgagattttgatgttccttattgcagtcaaatgtgtcgaaaaa |
1442657 |
T |
|
| Q |
108 |
gatgatgccatcgcaagagtcaatgatgagaacatgaaggttagaagagtttagagggaatttgagtattttctccgggatgatggtgttgttaattctt |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
1442658 |
gatgatgccatcgcaagagtcaatgatgagaacatgaaggttagaagagtttagaggaaatttgagtattgtctccgggatgatggtgttgttaattctt |
1442757 |
T |
|
| Q |
208 |
gagttgtcaaaaacaaatggaagtcgggaatcaaagagaaggtactcccttaaaggactcgggcataggacggtgaggtggtaatggcgggtccgtgaca |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1442758 |
gagttgtcaaaaacaaatggaagtcgggaatcaaagagaaggtactcccttaaacgactcgggcataggacggcgaggtggtaatggcgggtccgtgaca |
1442857 |
T |
|
| Q |
308 |
agcgaaggtgatctttggtgaagttaggatcagaaataatggaattcaagagcttgcagacacacttgagtgtcaatagcgacttcaaagggagcctgca |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| | |
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| T |
1442858 |
agcgaaggtgatctttggtgaagttaggatcagaaataatggaaatcaagagcttgcagacttacttgagtgtcaatagcgacttcaaagggagcctgta |
1442957 |
T |
|
| Q |
408 |
aaagatttctaacaccagatcaagtgataacggagcaaacatgccgagggtgtctgacgagttttgatttctttctgtagtcaacagctgatgaatgaag |
507 |
Q |
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| T |
1442958 |
aaagatttctaacaccagatcaagtgataacagagcaaacatgccgagggtgtctgacgagttttgatttctttctgtagtcaacagctgatgaatgaag |
1443057 |
T |
|
| Q |
508 |
tattcaacatggttgttaaaccttgtgagtacctgcgcaaaaaactaaa------tagggttagggttagggtcagaagatttcacgaggagagtgattt |
601 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1443058 |
tattcaacatggttgttaaaccttgtgagtacctgcgcaaaaaactaaatagggttagggttagggttagggtcagaagatttcacgaggagagtgattt |
1443157 |
T |
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| Q |
602 |
caatatgaacgcattgggcttaag |
625 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
1443158 |
caatatgaacgcattgggcttaag |
1443181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 282 - 421
Target Start/End: Original strand, 371518 - 371657
Alignment:
| Q |
282 |
gaggtggtaatggcgggtccgtgacaagcgaaggtgatctttggtgaagttaggatcagaaataatggaattcaagagcttgcagacacacttgagtgtc |
381 |
Q |
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|||||||||||| |||||| ||||||||||| ||||||||||| ||| |||||||| |||||||||||||||||| ||||||||||||||||||||||| |
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| T |
371518 |
gaggtggtaatgacgggtctttgacaagcgaaagtgatctttggcgaatttaggatcggaaataatggaattcaagggcttgcagacacacttgagtgtc |
371617 |
T |
|
| Q |
382 |
aatagcgacttcaaagggagcctgcaaaagatttctaaca |
421 |
Q |
| |
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|| || ||||||| | ||||||| | |||||||| |||| |
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| T |
371618 |
aagagtgacttcacggcgagcctgtacaagatttccaaca |
371657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 282 - 473
Target Start/End: Original strand, 1460262 - 1460453
Alignment:
| Q |
282 |
gaggtggtaatggcgggtccgtgacaagcgaaggtgatctttggtgaagttaggatcagaaataatggaattcaagagcttgcagacacacttgagtgtc |
381 |
Q |
| |
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||||| || |||||||||| |||||||||||||||||||||||| || |||||||||||||| | ||||||||| ||||| | ||||||||||||||| |
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| T |
1460262 |
gaggttgttatggcgggtctgtgacaagcgaaggtgatctttggaaaatttaggatcagaaattaaagaattcaagggcttggaaacacacttgagtgtc |
1460361 |
T |
|
| Q |
382 |
aatagcgacttcaaagggagcctgcaaaagatttctaacaccagatcaagtgataacggagcaaacatgccgagggtgtctgacgagttttg |
473 |
Q |
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|| || || |||| |||||| | | | || ||||||||||| ||||| |||||||| || ||||| |||||||| ||| ||| ||||||| |
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| T |
1460362 |
aagagtgatttcacagggagaccgtacaaaatttctaacactagatctggtgataacaaagaaaacaggccgagggggtccgacaagttttg |
1460453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 303 - 480
Target Start/End: Complemental strand, 175586 - 175409
Alignment:
| Q |
303 |
tgacaagcgaaggtgatctttggtgaagttaggatcagaaataatggaattcaagagcttgcagacacacttgagtgtcaatagcgacttcaaagggagc |
402 |
Q |
| |
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|||||||||||||||||| |||| ||| || ||||||||||||| |||||| || | ||| ||||||| ||||||||||| || ||||| | |||| | |
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| T |
175586 |
tgacaagcgaaggtgatcattggcgaatttgggatcagaaataaaggaattaaaaggtttggagacacagttgagtgtcaagagtgacttgataggggtc |
175487 |
T |
|
| Q |
403 |
ctgcaaaagatttctaacaccagatcaagtgataacggagcaaacatgccgagggtgtctgacgagttttgatttctt |
480 |
Q |
| |
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||| | | |||||||||| |||||| || |||| | ||||||||| |||||||| ||||||| ||||||| |||||| |
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| T |
175486 |
ctgtacagaatttctaacagcagatcgagagatagcagagcaaacaggccgagggggtctgacaagttttgttttctt |
175409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 282 - 421
Target Start/End: Original strand, 7565478 - 7565617
Alignment:
| Q |
282 |
gaggtggtaatggcgggtccgtgacaagcgaaggtgatctttggtgaagttaggatcagaaataatggaattcaagagcttgcagacacacttgagtgtc |
381 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||| | ||| |||||||| ||||| || ||||||||| ||| || |||||| | |||||| |
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| T |
7565478 |
gaggtggtaatggcgggtttgtgacaagcgaaggtgatctttagcgaatttaggatcggaaattattgaattcaaggacttacacacacacctaagtgtc |
7565577 |
T |
|
| Q |
382 |
aatagcgacttcaaagggagcctgcaaaagatttctaaca |
421 |
Q |
| |
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|| || || |||| |||||||| ||||||||||||| |
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| T |
7565578 |
aaaagtgatttcacggggagcctatgcaagatttctaaca |
7565617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 282 - 401
Target Start/End: Original strand, 1471650 - 1471769
Alignment:
| Q |
282 |
gaggtggtaatggcgggtccgtgacaagcgaaggtgatctttggtgaagttaggatcagaaataatggaattcaagagcttgcagacacacttgagtgtc |
381 |
Q |
| |
|
|||||||| ||| ||||| || |||||||||||||| |||||| || || ||||||||||| | | |||||||| ||||| | ||||||||||||||| |
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| T |
1471650 |
gaggtggttatgacgggtgtgtaacaagcgaaggtgacctttggcaaatttgggatcagaaattaagaaattcaagggcttggaaacacacttgagtgtc |
1471749 |
T |
|
| Q |
382 |
aatagcgacttcaaagggag |
401 |
Q |
| |
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|| || || |||| |||||| |
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| T |
1471750 |
aagagtgatttcacagggag |
1471769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 131
Target Start/End: Original strand, 7565304 - 7565333
Alignment:
| Q |
102 |
gaaaaagatgatgccatcgcaagagtcaat |
131 |
Q |
| |
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| T |
7565304 |
gaaaaagatgatgccatcgcaagagtcaat |
7565333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 302 - 437
Target Start/End: Complemental strand, 55419063 - 55418928
Alignment:
| Q |
302 |
gtgacaagcgaaggtgatctttggtgaagttaggatcagaaataatggaattcaagagcttgcagacacacttgagtgtcaatagcgacttcaaagggag |
401 |
Q |
| |
|
|||| ||||||| ||||||||||| || | ||||||||||| | || ||||||| ||||||| |||||||||||| ||| || ||||||| ||| || |
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|
| T |
55419063 |
gtgagaagcgaatgtgatctttggcaaatatgggatcagaaattaaggcattcaagggcttgcaaacacacttgagtatcatgagtgacttcacaggaag |
55418964 |
T |
|
| Q |
402 |
cctgcaaaagatttctaacaccagatcaagtgataa |
437 |
Q |
| |
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||| | | ||||||||||| || |||||| ||||| |
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|
| T |
55418963 |
cctatacaggatttctaacaacaaatcaagggataa |
55418928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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