View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0686-Insertion-7 (Length: 441)
Name: NF0686-Insertion-7
Description: NF0686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0686-Insertion-7 |
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Alignment Details
Target: chr7 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 15 - 391
Target Start/End: Complemental strand, 3030358 - 3029982
Alignment:
| Q |
15 |
atgaactcactaattttttcatctaaagatcattctatggaggaggtggttgatagcataatatgcgcttcatggaaaacttttttggccaaatatccta |
114 |
Q |
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| T |
3030358 |
atgaactcactaatcttttcatctaaagatcattctatggaggaggtggttgatagcataatatgcgcttcatggaaaaaaattttggccaaatattcta |
3030259 |
T |
|
| Q |
115 |
gaaaattgtgtatgtaatatgaatggtttcataacctaagataacattgttgtaatagtatgtgtcaccaaggatttatttttggttaggcaaagtaccc |
214 |
Q |
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| T |
3030258 |
aaaaattgtgtatgtaatatgaatggtttcataacctaagataacattgttgtaaaagtatgtgtcaccaaggatttatttttggttgggcaaagtaccc |
3030159 |
T |
|
| Q |
215 |
gttgtactttattcttttcttagatgtaatacttcttgtacttgattcaatgtttctttatatgtaatttttgcaattaaaaaggtaaaggagtaactgn |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3030158 |
gttgtactttattcttttcttagatgtaatacttcttgtacttgattcaatgtttctttatatgtaatttttgcaattaaaaaggtaaaggagtaactgt |
3030059 |
T |
|
| Q |
315 |
nnnnnnnaggattaatataggttaattttaatagatatattcatgtattaatatagattagtgtatgaaacaccacc |
391 |
Q |
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| T |
3030058 |
tttttttaggattaatataggttaattttaatagatatattcatgtattaatatagatcagtgtatgaaacaccacc |
3029982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 356 - 391
Target Start/End: Original strand, 9482213 - 9482248
Alignment:
| Q |
356 |
catgtattaatatagattagtgtatgaaacaccacc |
391 |
Q |
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| T |
9482213 |
catgtattaatatagattagtgtatgaaacaccacc |
9482248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 360
Target Start/End: Original strand, 9478810 - 9478848
Alignment:
| Q |
322 |
aggattaatataggttaattttaatagatatattcatgt |
360 |
Q |
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| T |
9478810 |
aggattaatatagattaattttaatagatatattcatgt |
9478848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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