View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0686-Insertion-9 (Length: 285)
Name: NF0686-Insertion-9
Description: NF0686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0686-Insertion-9 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 15 - 282
Target Start/End: Original strand, 38286302 - 38286569
Alignment:
| Q |
15 |
gcttagtcccttcacttttcatttgtttcagccttttgtaataatcatgttttgttgtttatcatttgcaggttatagaatttggttttagtttgatata |
114 |
Q |
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| T |
38286302 |
gcttagtcccttcacttttcatttgtttcagccttttgtaataatcatgttttgttgtttatcatttccaggttatagaatttggttttagtttgatata |
38286401 |
T |
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| Q |
115 |
aatattgaccaaatataaagtataattgttgaaatgtgttgtcatttgaggtgtatcttccacatcaatggatatgcgtaatcttgaaaaggtaatactc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
38286402 |
aatattgaccaaatataaagtataattgttgaaatgtgttgtcatttgaggtgtatcttccacatcaatgtatatgcgtaatcttgaaaaggtaatactt |
38286501 |
T |
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| Q |
215 |
gtaacttgttataaagcttaagatattactattctataagtatctttagtattctaagtatttggtag |
282 |
Q |
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| T |
38286502 |
gtgacttgttataaagcttatgatcttactattttataagtatctttagtattctaagtatttggtag |
38286569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 15 - 282
Target Start/End: Original strand, 28160001 - 28160265
Alignment:
| Q |
15 |
gcttagtcccttcacttttcatttgtttcagccttttgtaataatcatgttttgttgtttatcatttgcaggttatagaatttggttttagtttgatata |
114 |
Q |
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| T |
28160001 |
gcttagtcccttcacttt-catttgtttcagccttttgtaataatcatgttttgttgtttatcatttgcaagttatagaatttagttttagtttgatata |
28160099 |
T |
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| Q |
115 |
aatattgaccaaatataaagtataattgttgaaatgtgttgtcatttgaggtgtatcttccacatcaatggatatgcgtaatcttgaaaaggtaatactc |
214 |
Q |
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| T |
28160100 |
aatattgaccaaatg--aagtataattattgaaatgtgttgtcatttgaggtgtatcttccacatcaatgaatatgcgtaatcttgaaaaggtaatactc |
28160197 |
T |
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| Q |
215 |
gtaacttgttataaagcttaagatattactattctataagtatctttagtattctaagtatttggtag |
282 |
Q |
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|| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28160198 |
gtgacttgttataaagcttatgatcttactattctataagtatctttagtattctaagtatttggtag |
28160265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 15 - 282
Target Start/End: Complemental strand, 14358389 - 14358125
Alignment:
| Q |
15 |
gcttagtcccttcacttttcatttgtttcagccttttgtaataatcatgttttgttgtttatcatttgcaggttatagaatttggttttagtttgatata |
114 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
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| T |
14358389 |
gcttagtcccttcacttt-catttgtttcagccttttgtaataatcatgttttgttgtttatcattttcaggttatagaattttgttttagtttgatata |
14358291 |
T |
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| Q |
115 |
aatattgaccaaatataaagtataattgttgaaatgtgttgtcatttgaggtgtatcttccacatcaatggatatgcgtaatcttgaaaaggtaatactc |
214 |
Q |
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|||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
14358290 |
aatattgaccaaatg--aagtataatttttgaaatgtgttgtcatttgaggtgtatcttccacatcaatgtatatgcgtaatcttgaaaaggtaatactc |
14358193 |
T |
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| Q |
215 |
gtaacttgttataaagcttaagatattactattctataagtatctttagtattctaagtatttggtag |
282 |
Q |
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|| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14358192 |
gtgacttgttataaagcttatgatcttactattctataagtatctttagtattctaagtatttggtag |
14358125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 86 - 282
Target Start/End: Complemental strand, 13055771 - 13055577
Alignment:
| Q |
86 |
gttatagaatttggttttagtttgatataaatattgaccaaatataaagtataattgttgaaatgtgttgtcatttgaggtgtatcttccacatcaatgg |
185 |
Q |
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| T |
13055771 |
gttatagaatttggttttagtttgatataaatattgaccaaatg--aagtataattattgaaatgtgttgtcatttgaggtgtatcttccacatcaatgc |
13055674 |
T |
|
| Q |
186 |
atatgcgtaatcttgaaaaggtaatactcgtaacttgttataaagcttaagatattactattctataagtatctttagtattctaagtatttggtag |
282 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13055673 |
atatgcgtaatcttgaaaaggtaatactcgtgacttgttataaagcttatgatcttactattctataagtatctttagtattctaagtatttggtag |
13055577 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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