View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0686_high_1 (Length: 542)
Name: NF0686_high_1
Description: NF0686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0686_high_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 306 - 534
Target Start/End: Original strand, 14332362 - 14332590
Alignment:
| Q |
306 |
tagaaagtgatggtacattagtgatggtataaactataatggcacctacaagattaattttgactatggagtataaaagttaaacggtataaacatatta |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
14332362 |
tagaaagtgatggtacattagtgatggtataaactataatggcacctacaagattaattttgactatggattataaaagttaaacggtataaacatatta |
14332461 |
T |
|
| Q |
406 |
tataagcacaatttagagtgattaatcttgataacttacaattaaagtgattgatcttgtttcttcatccatcatgatgttaccatattgtagatcattg |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14332462 |
tataagcacaatttagagtgattaatcttgataacttacaattaaagtgattgatcttgtttcttcatccatcatgatgttaccatattgtagatcattg |
14332561 |
T |
|
| Q |
506 |
tgacaaaaaccaatctcttgatattcttc |
534 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
14332562 |
tgacaaaaaccaatctcttgatattcttc |
14332590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 306 - 534
Target Start/End: Original strand, 14425372 - 14425600
Alignment:
| Q |
306 |
tagaaagtgatggtacattagtgatggtataaactataatggcacctacaagattaattttgactatggagtataaaagttaaacggtataaacatatta |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
14425372 |
tagaaagtgatggtacattagtgatggtataaactataatggcacctacaagattaattttgactatggattataaaagttaaacggtataaacatatta |
14425471 |
T |
|
| Q |
406 |
tataagcacaatttagagtgattaatcttgataacttacaattaaagtgattgatcttgtttcttcatccatcatgatgttaccatattgtagatcattg |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14425472 |
tataagcacaatttagagtgattaatcttgataacttacaattaaagtgattgatcttgtttcttcatccatcatgatgttaccatattgtagatcattg |
14425571 |
T |
|
| Q |
506 |
tgacaaaaaccaatctcttgatattcttc |
534 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
14425572 |
tgacaaaaaccaatctcttgatattcttc |
14425600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 30 - 241
Target Start/End: Original strand, 14332086 - 14332297
Alignment:
| Q |
30 |
gattcagcaatacagaatgatctcaaaaaatttattgaaaatagaaagccgtaaaatgtatgagcaattcatttaccaggatatttactgtagtcaagaa |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14332086 |
gattcagcaatacagaatgatctcaaaaaaattattgaaaatagaaagccgtaaaatgtatgagcaattcatttaccaggatatttactgtagtcaagaa |
14332185 |
T |
|
| Q |
130 |
catgaggcgtgtcagtgtggtaatttgcggccatttcacagaaatgatttgcaaggtcatatgcaacaggattgtaactcgagtactcgtagtcctatat |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14332186 |
catgaggcgtgtcagtgtggtaatttgcggccatttcacagaaatgatttgcaaggtcatacgcaacaggattgtaactcgagtactcgtagtcctatat |
14332285 |
T |
|
| Q |
230 |
cattgataagta |
241 |
Q |
| |
|
|||||||||||| |
|
|
| T |
14332286 |
cattgataagta |
14332297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 30 - 241
Target Start/End: Original strand, 14425096 - 14425307
Alignment:
| Q |
30 |
gattcagcaatacagaatgatctcaaaaaatttattgaaaatagaaagccgtaaaatgtatgagcaattcatttaccaggatatttactgtagtcaagaa |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14425096 |
gattcagcaatacagaatgatctcaaaaaaattattgaaaatagaaagccgtaaaatgtatgagcaattcatttaccaggatatttactgtagtcaagaa |
14425195 |
T |
|
| Q |
130 |
catgaggcgtgtcagtgtggtaatttgcggccatttcacagaaatgatttgcaaggtcatatgcaacaggattgtaactcgagtactcgtagtcctatat |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14425196 |
catgaggcgtgtcagtgtggtaatttgcggccatttcacagaaatgatttgcaaggtcatacgcaacaggattgtaactcgagtactcgtagtcctatat |
14425295 |
T |
|
| Q |
230 |
cattgataagta |
241 |
Q |
| |
|
|||||||||||| |
|
|
| T |
14425296 |
cattgataagta |
14425307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 7e-35; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 100 - 231
Target Start/End: Original strand, 44103177 - 44103308
Alignment:
| Q |
100 |
atttaccaggatatttactgtagtcaagaacatgaggcgtgtcagtgtggtaatttgcggccatttcacagaaatgatttgcaaggtcatatgcaacagg |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| || ||| | ||||||| ||| |||||||||||||||||||| || |||||||| || | ||| |
|
|
| T |
44103177 |
atttaccaggatatttactgtagtcaagaaaatgaggtgtatcactatggtaatctgctgccatttcacagaaatgattagccaggtcatacgcgatagg |
44103276 |
T |
|
| Q |
200 |
attgtaactcgagtactcgtagtcctatatca |
231 |
Q |
| |
|
||||||||||| ||| |||||||||||||||| |
|
|
| T |
44103277 |
attgtaactcgcgtattcgtagtcctatatca |
44103308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 440 - 534
Target Start/End: Original strand, 44103388 - 44103482
Alignment:
| Q |
440 |
cttacaattaaagtgattgatcttgtttcttcatccatcatgatgttaccatattgtagatcattgtgacaaaaaccaatctcttgatattcttc |
534 |
Q |
| |
|
|||||||||| ||||||||||| || |||||||||||||| ||||| ||||||||||| |||||||| ||||||||||||||||||||| |||| |
|
|
| T |
44103388 |
cttacaattagggtgattgatctagtctcttcatccatcataatgttgccatattgtaggtcattgtggcaaaaaccaatctcttgatatccttc |
44103482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 103 - 204
Target Start/End: Complemental strand, 3600719 - 3600618
Alignment:
| Q |
103 |
taccaggatatttactgtagtcaagaacatgaggcgtgtcagtgtggtaatttgcggccatttcacagaaatgatttgcaaggtcatatgcaacaggatt |
202 |
Q |
| |
|
||||||||||||| || || ||||||| ||||||||| || || ||||| ||||| ||||| |||||||| || ||||| | ||||| || |||||||| |
|
|
| T |
3600719 |
taccaggatatttgctataatcaagaatatgaggcgtttctgtatggtagtttgcagccatctcacagaagtggtttgctatatcatacgctacaggatt |
3600620 |
T |
|
| Q |
203 |
gt |
204 |
Q |
| |
|
|| |
|
|
| T |
3600619 |
gt |
3600618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 462 - 513
Target Start/End: Original strand, 15546019 - 15546070
Alignment:
| Q |
462 |
ttgtttcttcatccatcatgatgttaccatattgtagatcattgtgacaaaa |
513 |
Q |
| |
|
||||| ||||||| | |||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
15546019 |
ttgttacttcatcaagcatgatgttaccatattgtaaatcattgtggcaaaa |
15546070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 208
Target Start/End: Original strand, 15545778 - 15545883
Alignment:
| Q |
103 |
taccaggatatttactgtagtcaagaacatgaggcgtgtcagtgtggtaatttgcggccatttcacagaaatgatttgcaaggtcatatgcaacaggatt |
202 |
Q |
| |
|
|||| ||||||||||| ||||| |||| ||| || || || || || |||||||| ||||||||| |||| || ||||| | ||||||||||| ||||| |
|
|
| T |
15545778 |
taccgggatatttactatagtcgagaatatgtggagtttcggtatgataatttgcagccatttcagagaagtggtttgctatatcatatgcaactggatt |
15545877 |
T |
|
| Q |
203 |
gtaact |
208 |
Q |
| |
|
||||| |
|
|
| T |
15545878 |
ataact |
15545883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1341 times since January 2019
Visitors: 4368