View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0686_low_13 (Length: 401)
Name: NF0686_low_13
Description: NF0686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0686_low_13 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 53 - 401
Target Start/End: Complemental strand, 36262769 - 36262421
Alignment:
| Q |
53 |
aaactttgtaactttggattagcaagagtggtagatgattacgattttggtgaagaggggttccaatttacaaggcatgttgttggcactcatggttaca |
152 |
Q |
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| T |
36262769 |
aaactttgtaactttggattagcaagagtggtagatgattacgattttggtgaagaggggttccaatttacaaggcatgttgttggcactcatggttaca |
36262670 |
T |
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| Q |
153 |
tgccacctgagtatatcgagaacggtttggttagtccaaagatggatgtttttgcttttggtgttgtgatgttggagcttctttcaggaagagaagcaat |
252 |
Q |
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| T |
36262669 |
tgccacctgagtatatcgagaacggtttggttagtccaaagatggatgtttttgcttttggtgttgtgatgttggagcttctttcgggaagagaagcaat |
36262570 |
T |
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| Q |
253 |
tgttggtgacaaaaatggaggagagaagcggctatcagctgtcgtgagtgaagtacttgaaggcgataatgtgagggagaaatttcatgctttcatggat |
352 |
Q |
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| T |
36262569 |
tgttggtgacaaaaatggaggagagaagcggctatcagctgtcgtgagtgaagtacttgaaggcgataatgtgagggagaaacttcatgctttcatggat |
36262470 |
T |
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| Q |
353 |
ccaactttgaggggtgaatacccattgaatatggcatattccatggcag |
401 |
Q |
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| T |
36262469 |
ccaactttgaggggtgaatacccattgaatatgggatattccatggcag |
36262421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 146 - 248
Target Start/End: Original strand, 37062404 - 37062506
Alignment:
| Q |
146 |
ggttacatgccacctgagtatatcgagaacggtttggttagtccaaagatggatgtttttgcttttggtgttgtgatgttggagcttctttcaggaagag |
245 |
Q |
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||||||||| |||| |||||||||||||| |||||| ||| ||||||||||||||||||||| |||||||||||||| |||||||||||||| || |||| |
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| T |
37062404 |
ggttacatggcaccggagtatatcgagaatggtttgattactccaaagatggatgtttttgcatttggtgttgtgattttggagcttctttctggtagag |
37062503 |
T |
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| Q |
246 |
aag |
248 |
Q |
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||| |
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| T |
37062504 |
aag |
37062506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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