View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0686_low_14 (Length: 399)
Name: NF0686_low_14
Description: NF0686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0686_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 28691860 - 28691496
Alignment:
| Q |
1 |
tttttgtgacattagcatgaagtgccttttgaacctctggcctatttaggtatgctgcagtataatctgatgcacatggatcatatcctgctagattttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28691860 |
tttttgtgacattagcatgaagtgccttttgaacctctggcctatttaggtatgctgcagtataatctgatgcacatggatcatatcctgctagattttt |
28691761 |
T |
|
| Q |
101 |
atgccacccgtcctattaaaatcgacaatttcaataggcaagtaactttagttgctgtagtatacgtgtactagtttttaagttctaaattgatgaatta |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||| | |
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| T |
28691760 |
atgccacccgtcctattaaaattgacaatttcaataggcaagtaacgttagttgcagta------gtgtactagtttttaagttctaaattgatga---a |
28691670 |
T |
|
| Q |
201 |
actcaccagtaccaatttggaaaaagaagaatgaggggcttcccttctgacgttgctgatattgctgaaacacatgggagcgtacaagctatacatgtct |
300 |
Q |
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||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28691669 |
actcaccagtaccaatttggaaa---aagaatga---------cttctgacgttgctgatattgctgaaacacatgggagcgtacaagctatacatgtct |
28691582 |
T |
|
| Q |
301 |
ataatcttatacacatcaaagtatttattaagttctgtattgcattcatctgtttgattttgaattggatggctgaagttgcatat |
386 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28691581 |
ataatcttatacacatcgaagtatttattaagttctgtattgcattcatctgtttgattttgaattggatggctgaagttgcatat |
28691496 |
T |
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