View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0686_low_16 (Length: 389)
Name: NF0686_low_16
Description: NF0686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0686_low_16 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 30 - 287
Target Start/End: Original strand, 7727648 - 7727905
Alignment:
| Q |
30 |
aagaggtggtttgagtttgggttgagagagtactcaagtttgggtgataagtatggttttaaactttgctatttatagaattcgtagcagccaggatgta |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7727648 |
aagaggtggtttgagtttgggttgagagagtactcaagtttgggtgataagtatggttttaatctttgctatttatagaattcgtagcagccaggatgta |
7727747 |
T |
|
| Q |
130 |
tatctgttttagtgaaagttggtcaaacagaaaggcttaaaataatgagataagaccctttgaatgcatccaaccatatatacattgacgtctagggagg |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7727748 |
tatctgttttagtgaaagttggtcaaacagaaaggcttaaaataatgagatatgaccctttgaatgcatccaaccatatatacattgacgtctagggagg |
7727847 |
T |
|
| Q |
230 |
tatatgtggagtaaagggctgctaccacaatatatcattaaagagaagggaacaaaaa |
287 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7727848 |
tgtatgtggagtaaagggctgctaccacaatatatcattaaagagaagggaacaaaaa |
7727905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 279 - 374
Target Start/End: Original strand, 7728089 - 7728184
Alignment:
| Q |
279 |
gaacaaaaataacgaggggacataaaggcgcaacctcctaggaattgataaacctatagttaggcaccaagtctattctttacataatattctctt |
374 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
7728089 |
gaacaaaaataacgaggggacataaagccgcaacctcctaggaattgataaacctatagttaggcaccaagtctattctttacatagtattctctt |
7728184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 30 - 175
Target Start/End: Original strand, 7731818 - 7731965
Alignment:
| Q |
30 |
aagaggtggtttgag-tttgggttgagagagtactcaagtttgggtgataagtatgg-ttttaaactttgctatttatagaattcgtagcagccaggatg |
127 |
Q |
| |
|
||||||||||||||| |||| ||| |||||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
7731818 |
aagaggtggtttgagctttgtgttaagagagtactcaagtttgggtgattagtattaattttaagctttgctatttatagaattcgtagtcgccaggatg |
7731917 |
T |
|
| Q |
128 |
tatatctgttttagtgaaagttggtcaaacagaaaggcttaaaataat |
175 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
7731918 |
tatatctgttttagtgaaagttggtcaaacaaggaggcttaaaataat |
7731965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 68 - 181
Target Start/End: Original strand, 7739995 - 7740106
Alignment:
| Q |
68 |
tttgggtgataagtatggttttaaactttgctatttatagaattcgtagcagccaggatgtatatctgttttagtgaaagttggtcaaacagaaaggctt |
167 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
7739995 |
tttgggtgataagtatgattttaagctttgctatttatagaaaacgtagcagccagtatg--tatctgttttagtgaaagttggtcaaacaagtaggctt |
7740092 |
T |
|
| Q |
168 |
aaaataatgagata |
181 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
7740093 |
aaaataatgagata |
7740106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 310 - 373
Target Start/End: Original strand, 3562324 - 3562389
Alignment:
| Q |
310 |
aacctcctaggaattgataaacctatagttaggca--ccaagtctattctttacataatattctct |
373 |
Q |
| |
|
|||||||||| | |||||||||||| | ||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
3562324 |
aacctcctagaagttgataaacctaaaattaggcataccaagtctattcttaacataatattctct |
3562389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 321 - 373
Target Start/End: Original strand, 9748892 - 9748946
Alignment:
| Q |
321 |
aattgataaacctatagttaggca--ccaagtctattctttacataatattctct |
373 |
Q |
| |
|
|||||||||||||| ||||||||| || ||||||||||| |||||||||||||| |
|
|
| T |
9748892 |
aattgataaacctaaagttaggcatacctagtctattcttaacataatattctct |
9748946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 363
Target Start/End: Original strand, 34066064 - 34066119
Alignment:
| Q |
310 |
aacctcctaggaattgataaacctatagttaggca--ccaagtctattctttacat |
363 |
Q |
| |
|
|||||||||| ||||| |||||||||| ||||||| |||||||||||||| |||| |
|
|
| T |
34066064 |
aacctcctagaaattgctaaacctataattaggcataccaagtctattcttaacat |
34066119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 833 times since January 2019
Visitors: 4393