View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0686_low_18 (Length: 369)
Name: NF0686_low_18
Description: NF0686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0686_low_18 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 98 - 209
Target Start/End: Complemental strand, 40195728 - 40195617
Alignment:
| Q |
98 |
gttttaaatcttcagtttgtatgttttacgaatggaagtggaacccgaaggattgtcttttgcgataattagttgtttgggttttaagggttttgtagtg |
197 |
Q |
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| T |
40195728 |
gttttaaatcttcgatttgtatgttttaagaatggaagtggaacccgaaggattgtcttttgcgataattggctgtttgggttttaagggttttgtagtg |
40195629 |
T |
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| Q |
198 |
gtttggcagtag |
209 |
Q |
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| T |
40195628 |
gtttgacagtag |
40195617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 159
Target Start/End: Original strand, 52867287 - 52867332
Alignment:
| Q |
114 |
ttgtatgttttacgaatggaagtggaacccgaaggattgtcttttg |
159 |
Q |
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| T |
52867287 |
ttgtatgttttatgaatggtagtggaacccgagtgattgtcttttg |
52867332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 46351 - 46291
Alignment:
| Q |
101 |
ttaaatcttcagtttgtatgttttacgaatggaagtggaacccgaaggattgtcttttgcg |
161 |
Q |
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| T |
46351 |
ttaaagcttcggtttgtatgttttacgaatggaagtggaatccgaaggattgccttttgcg |
46291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 155
Target Start/End: Complemental strand, 43280420 - 43280378
Alignment:
| Q |
113 |
tttgtatgttttacgaatggaagtggaacccgaaggattgtct |
155 |
Q |
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| T |
43280420 |
tttgtatgctttacgaatggaagtggaatccgaaggcttgtct |
43280378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 148
Target Start/End: Complemental strand, 10537633 - 10537597
Alignment:
| Q |
112 |
gtttgtatgttttacgaatggaagtggaacccgaagg |
148 |
Q |
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| T |
10537633 |
gtttgtatgctttacgaatggaagtggaatccgaagg |
10537597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 112 - 148
Target Start/End: Complemental strand, 10682323 - 10682287
Alignment:
| Q |
112 |
gtttgtatgttttacgaatggaagtggaacccgaagg |
148 |
Q |
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| T |
10682323 |
gtttgtatgctttacgaatggaagtggaatccgaagg |
10682287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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