View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0686_low_2 (Length: 863)
Name: NF0686_low_2
Description: NF0686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0686_low_2 |
 | |
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| [»] scaffold1342 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 575; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 13 - 678
Target Start/End: Complemental strand, 4013543 - 4012878
Alignment:
| Q |
13 |
aaaatccagagagtaggaaacaaaacacaagctatagagtatagacagcacctagcagccgcaacaacaacataacagtcccaaaaatctattgtcaact |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4013543 |
aaaatccagagagtaggaaacaaaacacaagctatagagtatagacaacacctagcagccgcaacaacaacataacagtcccaaaaatctattgtcaact |
4013444 |
T |
|
| Q |
113 |
ctccatcttcatagcttttatactaaatcatcaataattgactccgaactaataaatacacttatcaaaatgatataatgtgttaaa-actcttaatgaa |
211 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |
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| T |
4013443 |
ctccatcttcatagcgtttatactaaatcatcaataattgactccgaactaataaatgcacttatcaaaatgatataatgtgttaaagactcttaatgaa |
4013344 |
T |
|
| Q |
212 |
gtgcatttcaatttcaaaatcgactctttatctgttttggtatggtatgaataagcaatcaagcacttcaaaactattataaatcaaaattacaattgaa |
311 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
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| T |
4013343 |
gtgcatttcaattccaaaatcgactctttatctgttttggtatggtatgaataagcaatcgagcacttcaaaactattataaatcaaaattgcaattgaa |
4013244 |
T |
|
| Q |
312 |
gaagaaagatttcaacctaagtacctaggaaggcttttgattaaaagatgtatatatcaacattctacaggtctacatggcacgttgtcttaattgtttc |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
4013243 |
gaagaaagatttcaacctaagtacctaggaaggcttttgattaaaagatgtatatatcaacattctacaggtctacatggcacgttatcttaattgtttc |
4013144 |
T |
|
| Q |
412 |
atccaaatatattattacatttattttgtatcaatcagcaatttctgtaaggcacctaatgaatgggaagaataagcaagcaaacagttcaactattata |
511 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4013143 |
aaccaaatatattattacatttattttgtatcaatcagcaatttcggcaaggcacctaataaatgggaagaataagcaagcaaacagttcaactattata |
4013044 |
T |
|
| Q |
512 |
aatcaatattacaaattgaaacattataattgagaatcaagatcgatttaaatcaacactacagtttgtgatttactttttcattttcccccttttcttt |
611 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | ||| |
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|
| T |
4013043 |
aatcaatattac-aattgaaacattataattgagaatcaagatcgatttaaatcaacactacagtttgtgatttacgttttcattttcccccttctgttt |
4012945 |
T |
|
| Q |
612 |
tgcctaagattataggaaagttgaaattaaaatccaaatcaaaaaacgaaattaatcaacaaacaat |
678 |
Q |
| |
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|||||| | ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4012944 |
tgcctagggttataaaaaagttgaaattaaaaaccaaatcaaaaaacgaaattaatcaacaaacaat |
4012878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 677 - 768
Target Start/End: Complemental strand, 4012835 - 4012744
Alignment:
| Q |
677 |
atcagagccactattatatgggagccacgattaaaaaccaaatcaacaaacgaaatgaatactctcttgtgttatgagagccacgatttaga |
768 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
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| T |
4012835 |
atcagagccactattatatgggagccacgattaaaaaccaaatcaacaaacaaaatgaatactctcttgtgttatcagagccacgatttaga |
4012744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 559; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 13 - 678
Target Start/End: Complemental strand, 14835476 - 14834811
Alignment:
| Q |
13 |
aaaatccagagagtaggaaacaaaacacaagctatagagtatagacagcacctagcagccgcaacaacaacataacagtcccaaaaatctattgtcaact |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
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| T |
14835476 |
aaaatccagagagtaggaaacaaaacacaagctatagagtatagacagcacctagcagccgcaacaacaacagaacagtcccaaaaatctattgtcatct |
14835377 |
T |
|
| Q |
113 |
ctccatcttcatagcttttatactaaatcatcaataattgactccgaactaataaatacacttatcaaaatgatataatgtgttaaa-actcttaatgaa |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||| |||||||||||||||||||| |||||||||||| |
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|
| T |
14835376 |
ctccatcttcatagcttttatactaaatcatcaataattgactcggaactaataaatgcatttatcgaaatgatataatgtgttaaagactcttaatgaa |
14835277 |
T |
|
| Q |
212 |
gtgcatttcaatttcaaaatcgactctttatctgttttggtatggtatgaataagcaatcaagcacttcaaaactattataaatcaaaattacaattgaa |
311 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
14835276 |
gtgcatttcaatttcaaaatcgactctttctctgttttggtatggtatgaacaagcaatcaagcacttcaaaactattataaatcaacattacaattgaa |
14835177 |
T |
|
| Q |
312 |
gaagaaagatttcaacctaagtacctaggaaggcttttgattaaaagatgtatatatcaacattctacaggtctacatggcacgttgtcttaattgtttc |
411 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
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|
| T |
14835176 |
aaagaaacatttcaacctaactacctaggaaggcttttgattaaaagatgtatatatcaacattctataggtgtacatggcacgttgtcttaattgtttc |
14835077 |
T |
|
| Q |
412 |
atccaaatatattattacatttattttgtatcaatcagcaatttctgtaaggcacctaatgaatgggaagaataagcaagcaaacagttcaactattata |
511 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
14835076 |
atccaaatatattattacatttcttttgtatcaatcaacaatttctgtaaggcacctaataaatgggaagaataagcaagcaaacagttcaactattaga |
14834977 |
T |
|
| Q |
512 |
aatcaatattacaaattgaaacattataattgagaatcaagatcgatttaaatcaacactacagtttgtgatttactttttcattttcccccttttcttt |
611 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
14834976 |
aatcaatattac-aattgaaacattataattgagaatcaagatcgatttaaatcaacactacagtttgtgatttactttttcattttcccccttttgttt |
14834878 |
T |
|
| Q |
612 |
tgcctaagattataggaaagttgaaattaaaatccaaatcaaaaaacgaaattaatcaacaaacaat |
678 |
Q |
| |
|
|||||| | |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
14834877 |
tgcctagggttataggaaagttgaagttaaaaaccaaatcaaaaaacgaaattaatcaacaaacaat |
14834811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 557 - 656
Target Start/End: Original strand, 18477957 - 18478055
Alignment:
| Q |
557 |
atttaaatcaacactacagtttgtgatttactttttcattttcccccttttcttttgcctaagattataggaaagttgaaattaaaatccaaatcaaaaa |
656 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||| || | | |||| ||| |||||||| || |||||||||||| |
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|
| T |
18477957 |
atttaaatcaacattacagtttgtgatttactttttcatttt-ccccttttgttttgattagggtaatagaaaaattgaaattgaataccaaatcaaaaa |
18478055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1342 (Bit Score: 319; Significance: 1e-179; HSPs: 1)
Name: scaffold1342
Description:
Target: scaffold1342; HSP #1
Raw Score: 319; E-Value: 1e-179
Query Start/End: Original strand, 288 - 678
Target Start/End: Complemental strand, 2003 - 1614
Alignment:
| Q |
288 |
ttataaatcaaaattacaattgaagaagaaagatttcaacctaagtacctaggaaggcttttgattaaaagatgtatatatcaacattctacaggtctac |
387 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
2003 |
ttataaatcaacattacaattgaaaaagaaagatttcaacctaactacctaggaaggcttttgattaaaagatgtatatatcaacattctacaggtgtac |
1904 |
T |
|
| Q |
388 |
atggcacgttgtcttaattgtttcatccaaatatattattacatttattttgtatcaatcagcaatttctgtaaggcacctaatgaatgggaagaataag |
487 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
1903 |
atggcacgttgtcttaattgtttcatccaaatatattattacatttcttttgtatcaatcaacaatttctgtaaggcacctaataaatgggaagaataag |
1804 |
T |
|
| Q |
488 |
caagcaaacagttcaactattataaatcaatattacaaattgaaacattataattgagaatcaagatcgatttaaatcaacactacagtttgtgatttac |
587 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
1803 |
caagcaaacagttcaactattataaatcaatattac-aattgaaacattataattgagaatcaagatcgatttaaagcaacactgcagtttgtgatttac |
1705 |
T |
|
| Q |
588 |
tttttcattttcccccttttcttttgcctaagattataggaaagttgaaattaaaatccaaatcaaaaaacgaaattaatcaacaaacaat |
678 |
Q |
| |
|
|||||||||||||| ||||| ||||||||| | ||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||| |
|
|
| T |
1704 |
tttttcattttccctcttttgttttgcctagggttataggaaagttgaaattaaaaaccaaattaaaaaacaaaattaatcaacaaacaat |
1614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 247 - 310
Target Start/End: Complemental strand, 11034508 - 11034445
Alignment:
| Q |
247 |
tttggtatggtatgaataagcaatcaagcacttcaaaactattataaatcaaaattacaattga |
310 |
Q |
| |
|
|||| ||| |||||||||||||| |||||| |||||||||||| ||||| || |||| |||||| |
|
|
| T |
11034508 |
tttgatatagtatgaataagcaaacaagcaattcaaaactattttaaataaacattataattga |
11034445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 272 - 310
Target Start/End: Original strand, 19659268 - 19659306
Alignment:
| Q |
272 |
aagcacttcaaaactattataaatcaaaattacaattga |
310 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
19659268 |
aagcagttcaaaactattataaatcaatattacaattga |
19659306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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