View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0686_low_23 (Length: 313)

Name: NF0686_low_23
Description: NF0686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0686_low_23
NF0686_low_23
[»] chr5 (4 HSPs)
chr5 (66-287)||(38921465-38921686)
chr5 (96-283)||(35968556-35968743)
chr5 (170-287)||(16727822-16727939)
chr5 (192-240)||(35967405-35967453)
[»] chr7 (3 HSPs)
chr7 (66-287)||(41739632-41739853)
chr7 (216-283)||(42537730-42537797)
chr7 (216-287)||(45291933-45292004)
[»] chr4 (5 HSPs)
chr4 (66-287)||(30829937-30830157)
chr4 (66-287)||(52190187-52190420)
chr4 (170-287)||(52189196-52189313)
chr4 (162-206)||(31409401-31409445)
chr4 (172-287)||(8480884-8480999)
[»] chr1 (5 HSPs)
chr1 (66-287)||(35063452-35063673)
chr1 (170-287)||(26529518-26529635)
chr1 (170-233)||(36574026-36574089)
chr1 (211-287)||(49919676-49919752)
chr1 (193-262)||(35062599-35062668)
[»] chr8 (4 HSPs)
chr8 (66-287)||(17864533-17864766)
chr8 (172-287)||(17863476-17863591)
chr8 (174-263)||(3870802-3870891)
chr8 (170-225)||(32565568-32565623)
[»] chr3 (9 HSPs)
chr3 (159-287)||(9099570-9099698)
chr3 (216-285)||(37464968-37465037)
chr3 (173-287)||(20997643-20997757)
chr3 (162-225)||(36163455-36163518)
chr3 (162-243)||(19801840-19801919)
chr3 (95-144)||(19801946-19801995)
chr3 (162-283)||(37463693-37463814)
chr3 (170-225)||(20884298-20884353)
chr3 (66-94)||(19801986-19802014)
[»] chr2 (3 HSPs)
chr2 (162-241)||(4753584-4753663)
chr2 (170-285)||(31622039-31622154)
chr2 (162-233)||(36669081-36669152)
[»] chr6 (4 HSPs)
chr6 (163-225)||(18191818-18191880)
chr6 (162-225)||(30758798-30758861)
chr6 (216-287)||(9448746-9448817)
chr6 (162-224)||(21396367-21396429)


Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 66 - 287
Target Start/End: Complemental strand, 38921686 - 38921465
Alignment:
Q  66 agatgaaggaattgggggcattgaagaagattgaagaagatgatggcagaaacatgattgttgtcattttggtccctcatctatgagtataacagagtta 165  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38921686 agatgaaggaattgggggcattgaagaagattgaagaagatgatggcagaaacatgattgttgtcattttggtccctcatctatgagtataacagagtta 38921587  T
Q  166 ataccaagttaacgttttggatgcatttgactaacgaaacaatcattggaggagtttttggttcgtttcattgatctaggaatgtgcctgataacgaaca 265  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||  || ||    
T  38921586 acaccaagttaacgttttggatgcatttgactaacgaaacaatcattgggggagtttttggttcatttcattgatctagggatgtgcctgatagtgagca 38921487  T
Q  266 acactttcaaggacccaaatga 287  Q
    ||||||||| ||||||||||||    
T  38921486 acactttcagggacccaaatga 38921465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 96 - 283
Target Start/End: Original strand, 35968556 - 35968743
Alignment:
Q  96 ttgaagaagatgatggcagaaacatgattgttgtcattttggtccctcatctatgagtataacagagttaataccaagttaacgttttggatgcatttga 195  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  35968556 ttgaagaagatgatggcggaaacatgattgttgtcattttggtccctcatctatgagtataacaaagttaacaccaagttaacgttttggatgcatttga 35968655  T
Q  196 ctaacgaaacaatcattggaggagtttttggttcgtttcattgatctaggaatgtgcctgataacgaacaacactttcaaggacccaa 283  Q
    ||||| ||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| ||| ||||    
T  35968656 ctaacaaaacaataattgggggagtttttggttcgtttcattgatctatgaatgtgcctgatagcgaacaacactttcagggatccaa 35968743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 170 - 287
Target Start/End: Complemental strand, 16727939 - 16727822
Alignment:
Q  170 caagttaacgttttggatgcatttgactaacgaaacaatcattggaggagtttttggttcgtttcattgatctaggaatgtgcctgataacgaacaacac 269  Q
    |||||||| ||||||||||||||||||||||| ||||  |||||  | ||||||| ||||||||  |||||  ||||| ||| |||||| |||   ||||    
T  16727939 caagttaatgttttggatgcatttgactaacggaacagacattgaggaagtttttagttcgttttcttgattcaggaacgtggctgatagcgaggtacac 16727840  T
Q  270 tttcaaggacccaaatga 287  Q
    |||||  |||||||||||    
T  16727839 tttcagcgacccaaatga 16727822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 240
Target Start/End: Complemental strand, 35967453 - 35967405
Alignment:
Q  192 ttgactaacgaaacaatcattggaggagtttttggttcgtttcattgat 240  Q
    |||||||||| ||||| |||||| ||||||||||||| |||| ||||||    
T  35967453 ttgactaacggaacaaacattgggggagtttttggttagtttaattgat 35967405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 66 - 287
Target Start/End: Complemental strand, 41739853 - 41739632
Alignment:
Q  66 agatgaaggaattgggggcattgaagaagattgaagaagatgatggcagaaacatgattgttgtcattttggtccctcatctatgagtataacagagtta 165  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  41739853 agatgaaggaattgggggcattgaagaagattgaaaaagatgatggcagaaacatgattgttgtcattttgatccctcatctatgagtataacagagtta 41739754  T
Q  166 ataccaagttaacgttttggatgcatttgactaacgaaacaatcattggaggagtttttggttcgtttcattgatctaggaatgtgcctgataacgaaca 265  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||| ||    
T  41739753 acaccaagttaacgttttggatgcatttgactaacgaaacaatcattgggggagtttttggttcgtttcattgatctagggatgtgcctgatagcgagca 41739654  T
Q  266 acactttcaaggacccaaatga 287  Q
    | ||||||| | ||||||||||    
T  41739653 atactttcaggaacccaaatga 41739632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 216 - 283
Target Start/End: Complemental strand, 42537797 - 42537730
Alignment:
Q  216 ggagtttttggttcgtttcattgatctaggaatgtgcctgataacgaacaacactttcaaggacccaa 283  Q
    |||||||||||||||||||||||||  ||| |||| ||||||| ||| ||||||||||| ||||||||    
T  42537797 ggagtttttggttcgtttcattgattcagggatgtacctgatagcgagcaacactttcagggacccaa 42537730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 216 - 287
Target Start/End: Original strand, 45291933 - 45292004
Alignment:
Q  216 ggagtttttggttcgtttcattgatctaggaatgtgcctgataacgaacaacactttcaaggacccaaatga 287  Q
    ||||||||||||||| ||| |||||  ||| |||||||||||| |||   ||||||||| ||||||||||||    
T  45291933 ggagtttttggttcgattccttgattcagggatgtgcctgatagcgaggtacactttcagggacccaaatga 45292004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 66 - 287
Target Start/End: Complemental strand, 30830157 - 30829937
Alignment:
Q  66 agatgaaggaattgggggcattgaagaagattgaagaagatgatggcagaaacatgattgttgtcattttggtccctcatctatgagtataacagagtta 165  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  30830157 agatgaaggaattgagggcattgaagaagattgaaaaagatgatggcagaaacatgattgt-gtcattttggtccctcatctatgagtataacagagtta 30830059  T
Q  166 ataccaagttaacgttttggatgcatttgactaacgaaacaatcattggaggagtttttggttcgtttcattgatctaggaatgtgcctgataacgaaca 265  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||| ||    
T  30830058 acaccaagttaacgttttggatgcatttgactaacgaaacaatcattgggggagtttttggttcgtttcattgatctagggatgtgcctgatagcgagca 30829959  T
Q  266 acactttcaaggacccaaatga 287  Q
    ||||||||| ||||||||||||    
T  30829958 acactttcagggacccaaatga 30829937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 66 - 287
Target Start/End: Original strand, 52190187 - 52190420
Alignment:
Q  66 agatgaaggaattgggggcattgaagaagattgaagaagatgatggcagaaacatgattgttgtcattttggtccctcatctatgagtataa-------- 157  Q
    |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||            
T  52190187 agatgaaggaattgagggcattgaagaagattgaagaagatgaaggcagaaacatgattgttgtcattttggtccctcgtctatgagtataacggacaca 52190286  T
Q  158 ----cagagttaataccaagttaacgttttggatgcatttgactaacgaaacaatcattggaggagtttttggttcgtttcattgatctaggaatgtgcc 253  Q
        || | |||| ||||||||||||||||||||||||||||||||| |||||  |||||| |||||||||||||||||| ||||||| | | || || |    
T  52190287 tcagcacatttaacaccaagttaacgttttggatgcatttgactaacaaaacagacattgggggagtttttggttcgtttaattgatccatggatctggc 52190386  T
Q  254 tgataacgaacaacactttcaaggacccaaatga 287  Q
    ||||| |||    |||||||| ||||||||||||    
T  52190387 tgatagcgagatgcactttcagggacccaaatga 52190420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 170 - 287
Target Start/End: Complemental strand, 52189313 - 52189196
Alignment:
Q  170 caagttaacgttttggatgcatttgactaacgaaacaatcattggaggagtttttggttcgtttcattgatctaggaatgtgcctgataacgaacaacac 269  Q
    |||||||||||||||||||||||||||||||| ||||  |||||   ||||||||| || |||| ||||||| ||| ||||| |||||| |||    |||    
T  52189313 caagttaacgttttggatgcatttgactaacggaacatacattgagcgagtttttgatttgtttaattgatccagggatgtggctgatagcgaggtgcac 52189214  T
Q  270 tttcaaggacccaaatga 287  Q
    ||||| ||||||||||||    
T  52189213 tttcagggacccaaatga 52189196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 162 - 206
Target Start/End: Complemental strand, 31409445 - 31409401
Alignment:
Q  162 gttaataccaagttaacgttttggatgcatttgactaacgaaaca 206  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||    
T  31409445 gttaacaccaagttaacgttttggatgcatttgactaacggaaca 31409401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 172 - 287
Target Start/End: Original strand, 8480884 - 8480999
Alignment:
Q  172 agttaacgttttggatgcatttgactaacgaaacaatcattggaggagtttttggttcgtttcattgatctaggaatgtgcctgataacgaacaacactt 271  Q
    |||||||||||||||||    ||||||||| || |  | |||| |||||||||||| ||||||||||||| ||| | ||| |||||| |||   ||||||    
T  8480884 agttaacgttttggatgggaatgactaacggaagagactttgggggagtttttggtgcgtttcattgatccagggacgtgactgatagcgagatacactt 8480983  T
Q  272 tcaaggacccaaatga 287  Q
    ||| |||| |||||||    
T  8480984 tcagggactcaaatga 8480999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 170; Significance: 3e-91; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 66 - 287
Target Start/End: Original strand, 35063452 - 35063673
Alignment:
Q  66 agatgaaggaattgggggcattgaagaagattgaagaagatgatggcagaaacatgattgttgtcattttggtccctcatctatgagtataacagagtta 165  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  35063452 agatgaaggaattgggggcattgaagaagattgaagaagatgaaggcagaaacatgattgttgtcattttggtccctcgtctatgagtataacggagtta 35063551  T
Q  166 ataccaagttaacgttttggatgcatttgactaacgaaacaatcattggaggagtttttggttcgtttcattgatctaggaatgtgcctgataacgaaca 265  Q
    | ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||  ||||||||||||  || ||    
T  35063552 acaccaagttaacgttttggatgcatttgactaacgaaacaataattgggggagtttttggttcgtttcattgatctagagatgtgcctgatagtgagca 35063651  T
Q  266 acactttcaaggacccaaatga 287  Q
    |||||||||  |||||||||||    
T  35063652 acactttcagagacccaaatga 35063673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 170 - 287
Target Start/End: Complemental strand, 26529635 - 26529518
Alignment:
Q  170 caagttaacgttttggatgcatttgactaacgaaacaatcattggaggagtttttggttcgtttcattgatctaggaatgtgcctgataacgaacaacac 269  Q
    |||||||||||||||||||||||||||||||  ||||| |||||  ||||||||| ||||||||  |||||  ||| | ||| |||||| |||   ||||    
T  26529635 caagttaacgttttggatgcatttgactaacagaacaaacattgagggagtttttagttcgttttcttgattcagggacgtgtctgatagcgaggtacac 26529536  T
Q  270 tttcaaggacccaaatga 287  Q
    ||||| ||||||||||||    
T  26529535 tttcagggacccaaatga 26529518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 233
Target Start/End: Complemental strand, 36574089 - 36574026
Alignment:
Q  170 caagttaacgttttggatgcatttgactaacgaaacaatcattggaggagtttttggttcgttt 233  Q
    |||||||||||||||||||||||||||||||| ||||  |||||  ||||||||| ||||||||    
T  36574089 caagttaacgttttggatgcatttgactaacggaacagacattgagggagtttttagttcgttt 36574026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 211 - 287
Target Start/End: Original strand, 49919676 - 49919752
Alignment:
Q  211 ttggaggagtttttggttcgtttcattgatctaggaatgtgcctgataacgaacaacactttcaaggacccaaatga 287  Q
    |||| |||||||||||| ||||||||||||| ||| | ||| |||||| |||   ||||||||||||||||||||||    
T  49919676 ttgggggagtttttggtgcgtttcattgatccagggaagtgactgatagcgatgcacactttcaaggacccaaatga 49919752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 262
Target Start/End: Complemental strand, 35062668 - 35062599
Alignment:
Q  193 tgactaacgaaacaatcattggaggagtttttggttcgtttcattgatctaggaatgtgcctgataacga 262  Q
    ||||||||| ||||| |||||| ||||||||||||| |||| ||||||  ||| |||||  |||||||||    
T  35062668 tgactaacggaacaaacattgggggagtttttggttagtttaattgattcagggatgtggttgataacga 35062599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 66 - 287
Target Start/End: Original strand, 17864533 - 17864766
Alignment:
Q  66 agatgaaggaattgggggcattgaagaagattgaagaagatgatggcagaaacatgattgttgtcattttggtccctcatctatgagtat---------- 155  Q
    |||||||||||||| |  ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||  |||||||||||              
T  17864533 agatgaaggaattgagaacattgaagaagattgaagaagatgaaggcagaaacatgattgctgtcattttggtccctagtctatgagtataatggacaca 17864632  T
Q  156 --aacagagttaataccaagttaacgttttggatgcatttgactaacgaaacaatcattggaggagtttttggttcgtttcattgatctaggaatgtgcc 253  Q
      |||| | |||| |||||||||| |||||||||||||||||||||| ||| |  |||||  |||||| |||||||||||  ||||||  || ||||| |    
T  17864633 tcaacacaattaacaccaagttaatgttttggatgcatttgactaacaaaatagacattgagggagttcttggttcgtttatttgatccggggatgtggc 17864732  T
Q  254 tgataacgaacaacactttcaaggacccaaatga 287  Q
    ||||| |||    |||||||||||| ||||||||    
T  17864733 tgatagcgagatgcactttcaaggaaccaaatga 17864766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 172 - 287
Target Start/End: Complemental strand, 17863591 - 17863476
Alignment:
Q  172 agttaacgttttggatgcatttgactaacgaaacaatcattggaggagtttttggttcgtttcattgatctaggaatgtgcctgataacgaacaacactt 271  Q
    |||||||||||||||||||||||||| ||| ||||  ||||||||||||||||||||  ||| ||||||| | | ||||| |||||| |||    |||||    
T  17863591 agttaacgttttggatgcatttgactgacggaacatacattggaggagtttttggtttatttaattgatccaaggatgtggctgatagcgaggtgcactt 17863492  T
Q  272 tcaaggacccaaatga 287  Q
    ||| ||||||||||||    
T  17863491 tcagggacccaaatga 17863476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 263
Target Start/End: Complemental strand, 3870891 - 3870802
Alignment:
Q  174 ttaacgttttggatgcatttgactaacgaaacaatcattggaggagtttttggttcgtttcattgatctaggaatgtgcctgataacgaa 263  Q
    ||||||||||||| | | |||||||||| |||||  ||||| |||||||||| |||| || ||||||||||| | ||| |||||| ||||    
T  3870891 ttaacgttttggacgaaattgactaacggaacaactattgggggagtttttgattcgcttaattgatctagggacgtggctgatagcgaa 3870802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 170 - 225
Target Start/End: Original strand, 32565568 - 32565623
Alignment:
Q  170 caagttaacgttttggatgcatttgactaacgaaacaatcattggaggagtttttg 225  Q
    |||||||||||||||||||||||||||||||  |||   |||||| ||||||||||    
T  32565568 caagttaacgttttggatgcatttgactaacataacgtacattgggggagtttttg 32565623  T

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Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 159 - 287
Target Start/End: Complemental strand, 9099698 - 9099570
Alignment:
Q  159 agagttaataccaagttaacgttttggatgcatttgactaacgaaacaatcattggaggagtttttggttcgtttcattgatctaggaatgtgcctgata 258  Q
    |||||||| || ||||||||||||||||   |||||||||||| ||| | ||||| | ||||||||||||||||||||||||  ||| |||||| |||||    
T  9099698 agagttaacactaagttaacgttttggacttatttgactaacggaaccaacattgaaagagtttttggttcgtttcattgattcagggatgtgcttgata 9099599  T
Q  259 acgaacaacactttcaaggacccaaatga 287  Q
     |||   ||||||| | ||||||||||||    
T  9099598 gcgaggtacactttaagggacccaaatga 9099570  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 216 - 285
Target Start/End: Original strand, 37464968 - 37465037
Alignment:
Q  216 ggagtttttggttcgtttcattgatctaggaatgtgcctgataacgaacaacactttcaaggacccaaat 285  Q
    ||||||||||||| |||||||||||||||| |||| ||||||| ||| ||||||||||| ||||||||||    
T  37464968 ggagtttttggtttgtttcattgatctagggatgtacctgatagcgagcaacactttcagggacccaaat 37465037  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 287
Target Start/End: Complemental strand, 20997757 - 20997643
Alignment:
Q  173 gttaacgttttggatgcatttgactaacgaaacaatcattggaggagtttttggttcgtttcattgatctaggaatgtgcctgataacgaacaacacttt 272  Q
    ||||||||||||||   |||||||||||||||| | ||||| |||||||||||||| |||| |||||||  || |||||| ||||| |||   ||| |||    
T  20997757 gttaacgttttggacttatttgactaacgaaaccaacattgaaggagtttttggtttgttttattgatcctgggatgtgcttgatagcgaggtacatttt 20997658  T
Q  273 caaggacccaaatga 287  Q
    || ||||||||||||    
T  20997657 cagggacccaaatga 20997643  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 225
Target Start/End: Complemental strand, 36163518 - 36163455
Alignment:
Q  162 gttaataccaagttaacgttttggatgcatttgactaacgaaacaatcattggaggagtttttg 225  Q
    ||||| |||||||||||||||||||||||||||||||||  |||   |||||| ||||||||||    
T  36163518 gttaacaccaagttaacgttttggatgcatttgactaacataacgtacattgggggagtttttg 36163455  T

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Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 243
Target Start/End: Complemental strand, 19801919 - 19801840
Alignment:
Q  162 gttaataccaagttaacgttttggatgcatttgactaacgaaacaatcattggaggagtttttggttcgtttcattgatcta 243  Q
    ||||| || |||||||||||||||||  ||||||||||| || |||  | ||| |||||||||||||||||| |||||||||    
T  19801919 gttaacacaaagttaacgttttggataaatttgactaacaaatcaa--aatgggggagtttttggttcgtttaattgatcta 19801840  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 95 - 144
Target Start/End: Complemental strand, 19801995 - 19801946
Alignment:
Q  95 attgaagaagatgatggcagaaacatgattgttgtcattttggtccctca 144  Q
    |||||||||| ||| ||||||||||| ||||| |||||||||||||||||    
T  19801995 attgaagaagttgaaggcagaaacataattgtggtcattttggtccctca 19801946  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 283
Target Start/End: Complemental strand, 37463814 - 37463693
Alignment:
Q  162 gttaataccaagttaacgttttggatgcatttgactaacgaaacaatcattggaggagtttttggttcgtttcattgatctaggaatgtgcctgataacg 261  Q
    ||||| ||||||||||||||||||| | |  ||||||| | || |  |||| || |||||||||| |||||||||||||| ||| | |||| ||||| ||    
T  37463814 gttaacaccaagttaacgttttggacgtaaatgactaatggaagagacattagatgagtttttggatcgtttcattgatccagggacgtgcttgatagcg 37463715  T
Q  262 aacaacactttcaaggacccaa 283  Q
    |  |||||||||| | ||||||    
T  37463714 agaaacactttcaggaacccaa 37463693  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 170 - 225
Target Start/End: Complemental strand, 20884353 - 20884298
Alignment:
Q  170 caagttaacgttttggatgcatttgactaacgaaacaatcattggaggagtttttg 225  Q
    ||||||||||||||||||||||||||||||   ||||   ||||||||||||||||    
T  20884353 caagttaacgttttggatgcatttgactaagagaacatgtattggaggagtttttg 20884298  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 94
Target Start/End: Complemental strand, 19802014 - 19801986
Alignment:
Q  66 agatgaaggaattgggggcattgaagaag 94  Q
    |||||||||||||||||||||||||||||    
T  19802014 agatgaaggaattgggggcattgaagaag 19801986  T

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Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 162 - 241
Target Start/End: Complemental strand, 4753663 - 4753584
Alignment:
Q  162 gttaataccaagttaacgttttggatgcatttgactaacgaaacaatcattggaggagtttttggttcgtttcattgatc 241  Q
    ||||| ||||||||||||||||||||||||||||||||| |||||  |||||  |||||||||| ||| ||| |||||||    
T  4753663 gttaacaccaagttaacgttttggatgcatttgactaacaaaacatacattgagggagtttttgattcatttaattgatc 4753584  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 285
Target Start/End: Original strand, 31622039 - 31622154
Alignment:
Q  170 caagttaacgttttggatgcatttgactaacgaaacaatcattggaggagtttttggttcgtttcattgatctaggaatgtgcctgataacgaacaacac 269  Q
    ||||||||||||||||||||||||||| |||| ||||| |||||  ||||||||| ||| ||||  |||||  ||| | |||  |||||||||   ||||    
T  31622039 caagttaacgttttggatgcatttgacaaacggaacaaacattgagggagtttttagtttgttttcttgattcagggacgtggttgataacgaggtacac 31622138  T
Q  270 tttcaaggacccaaat 285  Q
    ||||| ||||||||||    
T  31622139 tttcagggacccaaat 31622154  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 233
Target Start/End: Original strand, 36669081 - 36669152
Alignment:
Q  162 gttaataccaagttaacgttttggatgcatttgactaacgaaacaatcattggaggagtttttggttcgttt 233  Q
    ||||||| |||||||||||||||||||||||||||||||  ||||  |||||  ||||||||| ||| ||||    
T  36669081 gttaatatcaagttaacgttttggatgcatttgactaacagaacagacattgagggagtttttagtttgttt 36669152  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 163 - 225
Target Start/End: Complemental strand, 18191880 - 18191818
Alignment:
Q  163 ttaataccaagttaacgttttggatgcatttgactaacgaaacaatcattggaggagtttttg 225  Q
    ||||||||||||||||||||||||||||||||||||||  ||||  |||||| ||||||||||    
T  18191880 ttaataccaagttaacgttttggatgcatttgactaacataacatacattgggggagtttttg 18191818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 225
Target Start/End: Original strand, 30758798 - 30758861
Alignment:
Q  162 gttaataccaagttaacgttttggatgcatttgactaacgaaacaatcattggaggagtttttg 225  Q
    ||||| |||||||||| |||||||||||||||||||||| |||||  |||||  ||||||||||    
T  30758798 gttaacaccaagttaatgttttggatgcatttgactaacaaaacatacattgagggagtttttg 30758861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 216 - 287
Target Start/End: Original strand, 9448746 - 9448817
Alignment:
Q  216 ggagtttttggttcgtttcattgatctaggaatgtgcctgataacgaacaacactttcaaggacccaaatga 287  Q
    ||||||||||||||| ||| |||||| ||| ||||| |||||| |||   ||||||||| ||||||||||||    
T  9448746 ggagtttttggttcgattccttgatccagggatgtgtctgatagcgaggtacactttcagggacccaaatga 9448817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 162 - 224
Target Start/End: Complemental strand, 21396429 - 21396367
Alignment:
Q  162 gttaataccaagttaacgttttggatgcatttgactaacgaaacaatcattggaggagttttt 224  Q
    ||||| ||||||||| ||||||||||| ||||||||||   ||||  ||||||||||||||||    
T  21396429 gttaacaccaagttagcgttttggatgtatttgactaaaagaacatacattggaggagttttt 21396367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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