View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0686_low_27 (Length: 300)
Name: NF0686_low_27
Description: NF0686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0686_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 78 - 236
Target Start/End: Original strand, 51008498 - 51008660
Alignment:
| Q |
78 |
ataagcaactttgtttctacttgatttgcttagataatatttttggtata----agctgttttatgtatgcatatgatctaaatattttgatgatgatga |
173 |
Q |
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| T |
51008498 |
ataagcaaatttgtttctacttgatttgcttagataatatttttggtatatataagctgttttatgtatgcatatgatctaaatattttgatgatgatga |
51008597 |
T |
|
| Q |
174 |
ttcagttaactattgctgttatttaagcttattgtatgaatataaagaataaattctactgat |
236 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51008598 |
ttcagttaactattgctgtcatttaagcttattgtatgaatataaagaataaattctactgat |
51008660 |
T |
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