View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0686_low_28 (Length: 299)
Name: NF0686_low_28
Description: NF0686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0686_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 29 - 291
Target Start/End: Original strand, 10981923 - 10982185
Alignment:
| Q |
29 |
attaaggatcttcatatgcctcttcaaattccagggttaccaaagagtctttcaacagatgattaccctgacggattcaatgattctatttctgagaata |
128 |
Q |
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| T |
10981923 |
attaaggatcttcatatgcctcttcaaattccagggttaccaaagagtctttcaacagatgattaccctgacggattcaatgattctatttctgagaata |
10982022 |
T |
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| Q |
129 |
aagtgttacaagatatgcttgattccatgaaaactacgagggaatgtgatgggattatagtgaacacttttgatggtattgaaggaagagcaattaaagc |
228 |
Q |
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| T |
10982023 |
aagtgttacaagatatgcttgattccatgaaaactacgagggaatgtgatgggattatagtgaacacttttgatggtattgaaggaagagcaattaaagc |
10982122 |
T |
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| Q |
229 |
attgaatgaaggattatttattcctaatggtattccatccattttctgtactggacctatgat |
291 |
Q |
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| T |
10982123 |
tttgaatgaaggattatttattcctgatggtattccatccattttctgtactggacctttgat |
10982185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 158 - 285
Target Start/End: Original strand, 10968099 - 10968229
Alignment:
| Q |
158 |
aaaactacgagggaatgtgatgggattatagtgaacacttttgatggtattgaaggaagagcaattaaagcattgaatgaaggattatttattcctaatg |
257 |
Q |
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| T |
10968099 |
aaaactatgaggcaatgtgatggggttattgtgaacacttttgatgctattgagggaaaagctaataaagctttgaatgaaggattatatattcctgatg |
10968198 |
T |
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| Q |
258 |
g---tattccatccattttctgtactggacc |
285 |
Q |
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| T |
10968199 |
gaactactccatccattttttgtattggacc |
10968229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 32 - 240
Target Start/End: Original strand, 11002159 - 11002361
Alignment:
| Q |
32 |
aaggatcttcatatgcctcttcaaattccagggttaccaaagagtctttcaacagatgattaccctgacggattcaatgattctatttctgagaataaag |
131 |
Q |
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||||||||||||||||||||| ||||||| ||||||||||||| |||| ||||| |||||||| || | | || |||||| |||| ||||| |
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| T |
11002159 |
aaggatcttcatatgcctcttaaaattcccgggttaccaaagaacttttcgacagacgattaccccgatgaagctaaggattct------gagagtaaag |
11002252 |
T |
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| Q |
132 |
tgttacaagatat-gcttgattccatgaaaactacgagggaatgtgatgggattatagtgaacacttttgatggtattgaaggaagagcaattaaagcat |
230 |
Q |
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||| |||||| | ||||||||| |||||| | ||||||||||| ||||||||| |||||||||||||||| |||||||| || ||| ||||||| | |
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| T |
11002253 |
-gttgcaagattttgcttgattcggcgaaaacaatgagggaatgtgctgggattattgtgaacacttttgatgctattgaagaaaaagctattaaaggtt |
11002351 |
T |
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| Q |
231 |
tgaatgaagg |
240 |
Q |
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|||||||||| |
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| T |
11002352 |
tgaatgaagg |
11002361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 10967999 - 10968070
Alignment:
| Q |
28 |
cattaaggatcttcatatgcctcttcaaattccagggttaccaaagagtctttcaacagatgattaccctga |
99 |
Q |
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|||||||||||| |||| |||||||| |||||| ||||||||||| | | |||||||||||||||||||||| |
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| T |
10967999 |
cattaaggatctccatacgcctcttcgaattcctgggttaccaaaaaatatttcaacagatgattaccctga |
10968070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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