View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0686_low_3 (Length: 863)
Name: NF0686_low_3
Description: NF0686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0686_low_3 |
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| [»] scaffold1342 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 572; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 16 - 678
Target Start/End: Complemental strand, 4013540 - 4012878
Alignment:
| Q |
16 |
atccagagagtaggaaacaaaacacaagctatagagtatagacagcacctagcagccgcaacaacaacataacagtcccaaaaatctattgtcaactctc |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4013540 |
atccagagagtaggaaacaaaacacaagctatagagtatagacaacacctagcagccgcaacaacaacataacagtcccaaaaatctattgtcaactctc |
4013441 |
T |
|
| Q |
116 |
catcttcatagcttttatactaaatcatcaataattgactccgaactaataaatacacttatcaaaatgatataatgtgttaaa-actcttaatgaagtg |
214 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
4013440 |
catcttcatagcgtttatactaaatcatcaataattgactccgaactaataaatgcacttatcaaaatgatataatgtgttaaagactcttaatgaagtg |
4013341 |
T |
|
| Q |
215 |
catttcaatttcaaaatcgactctttatctgttttggtatggtatgaataagcaatcaagcacttcaaaactattataaatcaaaattacaattgaagaa |
314 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |
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| T |
4013340 |
catttcaattccaaaatcgactctttatctgttttggtatggtatgaataagcaatcgagcacttcaaaactattataaatcaaaattgcaattgaagaa |
4013241 |
T |
|
| Q |
315 |
gaaagatttcaacctaagtacctaggaaggcttttgattaaaagatgtatatatcaacattctacaggtctacatggcacgttgtcttaattgtttcatc |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
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| T |
4013240 |
gaaagatttcaacctaagtacctaggaaggcttttgattaaaagatgtatatatcaacattctacaggtctacatggcacgttatcttaattgtttcaac |
4013141 |
T |
|
| Q |
415 |
caaatatattattacatttattttgtatcaatcagcaatttctgtaaggcacctaatgaatgggaagaataagcaagcaaacagttcaactattataaat |
514 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
4013140 |
caaatatattattacatttattttgtatcaatcagcaatttcggcaaggcacctaataaatgggaagaataagcaagcaaacagttcaactattataaat |
4013041 |
T |
|
| Q |
515 |
caatattacaaattgaaacattataattgagaatcaagatcgatttaaatcaacactacagtttgtgatttactttttcattttcccccttttcttttgc |
614 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||| |
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| T |
4013040 |
caatattac-aattgaaacattataattgagaatcaagatcgatttaaatcaacactacagtttgtgatttacgttttcattttcccccttctgttttgc |
4012942 |
T |
|
| Q |
615 |
ctaagattataggaaagttgaaattaaaatccaaatcaaaaaacgaaattaatcaacaaacaat |
678 |
Q |
| |
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||| | ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4012941 |
ctagggttataaaaaagttgaaattaaaaaccaaatcaaaaaacgaaattaatcaacaaacaat |
4012878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 677 - 768
Target Start/End: Complemental strand, 4012835 - 4012744
Alignment:
| Q |
677 |
atcagagccactattatatgggagccacgattaaaaaccaaatcaacaaacgaaatgaatactctcttgtgttatgagagccacgatttaga |
768 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
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| T |
4012835 |
atcagagccactattatatgggagccacgattaaaaaccaaatcaacaaacaaaatgaatactctcttgtgttatcagagccacgatttaga |
4012744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 556; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 16 - 678
Target Start/End: Complemental strand, 14835473 - 14834811
Alignment:
| Q |
16 |
atccagagagtaggaaacaaaacacaagctatagagtatagacagcacctagcagccgcaacaacaacataacagtcccaaaaatctattgtcaactctc |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| |
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| T |
14835473 |
atccagagagtaggaaacaaaacacaagctatagagtatagacagcacctagcagccgcaacaacaacagaacagtcccaaaaatctattgtcatctctc |
14835374 |
T |
|
| Q |
116 |
catcttcatagcttttatactaaatcatcaataattgactccgaactaataaatacacttatcaaaatgatataatgtgttaaa-actcttaatgaagtg |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
14835373 |
catcttcatagcttttatactaaatcatcaataattgactcggaactaataaatgcatttatcgaaatgatataatgtgttaaagactcttaatgaagtg |
14835274 |
T |
|
| Q |
215 |
catttcaatttcaaaatcgactctttatctgttttggtatggtatgaataagcaatcaagcacttcaaaactattataaatcaaaattacaattgaagaa |
314 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| || |
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| T |
14835273 |
catttcaatttcaaaatcgactctttctctgttttggtatggtatgaacaagcaatcaagcacttcaaaactattataaatcaacattacaattgaaaaa |
14835174 |
T |
|
| Q |
315 |
gaaagatttcaacctaagtacctaggaaggcttttgattaaaagatgtatatatcaacattctacaggtctacatggcacgttgtcttaattgtttcatc |
414 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
14835173 |
gaaacatttcaacctaactacctaggaaggcttttgattaaaagatgtatatatcaacattctataggtgtacatggcacgttgtcttaattgtttcatc |
14835074 |
T |
|
| Q |
415 |
caaatatattattacatttattttgtatcaatcagcaatttctgtaaggcacctaatgaatgggaagaataagcaagcaaacagttcaactattataaat |
514 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
14835073 |
caaatatattattacatttcttttgtatcaatcaacaatttctgtaaggcacctaataaatgggaagaataagcaagcaaacagttcaactattagaaat |
14834974 |
T |
|
| Q |
515 |
caatattacaaattgaaacattataattgagaatcaagatcgatttaaatcaacactacagtttgtgatttactttttcattttcccccttttcttttgc |
614 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
14834973 |
caatattac-aattgaaacattataattgagaatcaagatcgatttaaatcaacactacagtttgtgatttactttttcattttcccccttttgttttgc |
14834875 |
T |
|
| Q |
615 |
ctaagattataggaaagttgaaattaaaatccaaatcaaaaaacgaaattaatcaacaaacaat |
678 |
Q |
| |
|
||| | |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
14834874 |
ctagggttataggaaagttgaagttaaaaaccaaatcaaaaaacgaaattaatcaacaaacaat |
14834811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 557 - 656
Target Start/End: Original strand, 18477957 - 18478055
Alignment:
| Q |
557 |
atttaaatcaacactacagtttgtgatttactttttcattttcccccttttcttttgcctaagattataggaaagttgaaattaaaatccaaatcaaaaa |
656 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||| || | | |||| ||| |||||||| || |||||||||||| |
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|
| T |
18477957 |
atttaaatcaacattacagtttgtgatttactttttcatttt-ccccttttgttttgattagggtaatagaaaaattgaaattgaataccaaatcaaaaa |
18478055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1342 (Bit Score: 319; Significance: 1e-179; HSPs: 1)
Name: scaffold1342
Description:
Target: scaffold1342; HSP #1
Raw Score: 319; E-Value: 1e-179
Query Start/End: Original strand, 288 - 678
Target Start/End: Complemental strand, 2003 - 1614
Alignment:
| Q |
288 |
ttataaatcaaaattacaattgaagaagaaagatttcaacctaagtacctaggaaggcttttgattaaaagatgtatatatcaacattctacaggtctac |
387 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
2003 |
ttataaatcaacattacaattgaaaaagaaagatttcaacctaactacctaggaaggcttttgattaaaagatgtatatatcaacattctacaggtgtac |
1904 |
T |
|
| Q |
388 |
atggcacgttgtcttaattgtttcatccaaatatattattacatttattttgtatcaatcagcaatttctgtaaggcacctaatgaatgggaagaataag |
487 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
1903 |
atggcacgttgtcttaattgtttcatccaaatatattattacatttcttttgtatcaatcaacaatttctgtaaggcacctaataaatgggaagaataag |
1804 |
T |
|
| Q |
488 |
caagcaaacagttcaactattataaatcaatattacaaattgaaacattataattgagaatcaagatcgatttaaatcaacactacagtttgtgatttac |
587 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
1803 |
caagcaaacagttcaactattataaatcaatattac-aattgaaacattataattgagaatcaagatcgatttaaagcaacactgcagtttgtgatttac |
1705 |
T |
|
| Q |
588 |
tttttcattttcccccttttcttttgcctaagattataggaaagttgaaattaaaatccaaatcaaaaaacgaaattaatcaacaaacaat |
678 |
Q |
| |
|
|||||||||||||| ||||| ||||||||| | ||||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||| |
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|
| T |
1704 |
tttttcattttccctcttttgttttgcctagggttataggaaagttgaaattaaaaaccaaattaaaaaacaaaattaatcaacaaacaat |
1614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 247 - 310
Target Start/End: Complemental strand, 11034508 - 11034445
Alignment:
| Q |
247 |
tttggtatggtatgaataagcaatcaagcacttcaaaactattataaatcaaaattacaattga |
310 |
Q |
| |
|
|||| ||| |||||||||||||| |||||| |||||||||||| ||||| || |||| |||||| |
|
|
| T |
11034508 |
tttgatatagtatgaataagcaaacaagcaattcaaaactattttaaataaacattataattga |
11034445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 272 - 310
Target Start/End: Original strand, 19659268 - 19659306
Alignment:
| Q |
272 |
aagcacttcaaaactattataaatcaaaattacaattga |
310 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||||| |
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|
| T |
19659268 |
aagcagttcaaaactattataaatcaatattacaattga |
19659306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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