View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0686_low_30 (Length: 293)
Name: NF0686_low_30
Description: NF0686
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0686_low_30 |
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| [»] scaffold0391 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 162; Significance: 2e-86; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 50 - 235
Target Start/End: Complemental strand, 33952709 - 33952524
Alignment:
| Q |
50 |
gagcagaggttaattagttacttaaaagataaaaaattatttgacaggatttatgtagagtatcattcatgtgagatatttaacaacttaagtagcctag |
149 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33952709 |
gagcagaggttaattagttacttaaaagataaaaaatcatttgacaggatttatgtagagtatcattcatgtgagatatttaacaatttaagtagcctag |
33952610 |
T |
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| Q |
150 |
aagaaaatataataataacagtcctagtaccttggcattatgacattagccaaattcatgatgcctaatttgttgatgatgtccat |
235 |
Q |
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| T |
33952609 |
aagaaaatataataataatagtcatagtaccttggtattatgacattagccaaattcatgatgcctaatttgttgatgatttccat |
33952524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 50 - 235
Target Start/End: Complemental strand, 33960015 - 33959824
Alignment:
| Q |
50 |
gagcagaggttaattagttacttaaaagataaaaaattatttgacaggatttatgtagagtatcattcatgtgagatatttaacaacttaagtagcctag |
149 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33960015 |
gagcagaggttaattagttacttaaaagataaaaaattatttgacaggatttatgtagagtatcattcatgtgagatatttaacaatttaagtagcctag |
33959916 |
T |
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| Q |
150 |
aagaaaatataata------ataacagtcctagtaccttggcattatgacattagccaaattcatgatgcctaatttgttgatgatgtccat |
235 |
Q |
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| T |
33959915 |
aagaaaatataataataataataatagtcgtagtaccttggtattatgacattagccaaattcatgatgcctaatttgttgatgatttccat |
33959824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 50 - 235
Target Start/End: Complemental strand, 33975315 - 33975124
Alignment:
| Q |
50 |
gagcagaggttaattagttacttaaaagataaaaaattatttgacaggatttatgtagagtatcattcatgtgagatatttaacaacttaagtagcctag |
149 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
33975315 |
gagcagaggttaattagttacttaaaagataaaaaattatttgacaggatttatgtagagtatcattcatgtgagatatttaacaatttaagtagcctag |
33975216 |
T |
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| Q |
150 |
aagaaaatataata------ataacagtcctagtaccttggcattatgacattagccaaattcatgatgcctaatttgttgatgatgtccat |
235 |
Q |
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| T |
33975215 |
aagaaaatataataataataataatagtcgtagtaccttggtattatgacattagccaaattcatgatgcctaatttgttgatgatttccat |
33975124 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 54 - 235
Target Start/End: Complemental strand, 33992224 - 33992044
Alignment:
| Q |
54 |
agaggttaattagttacttaaaagataaaaaattatttgacaggatttatgtagagtatcattcatgtgagatatttaacaacttaagtagcctagaaga |
153 |
Q |
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| T |
33992224 |
agaggttaattaattacttaaa-gataaaaaatcatttgacaggatttatgtagagtatcattcatgtgagatatttaacaatttaagtagcctagaaga |
33992126 |
T |
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| Q |
154 |
aaatataataataacagtcctagtaccttggcattatgacattagccaaattcatgatgcctaatttgttgatgatgtccat |
235 |
Q |
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|||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33992125 |
aaatataataataatagtcgtagtaccttggtattatgacattagccaaattcatgatgcctaatttgttgatgatttccat |
33992044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 50 - 235
Target Start/End: Original strand, 8278047 - 8278231
Alignment:
| Q |
50 |
gagcagaggttaattagttacttaaaagataaaaaattatttgacaggatttatgtagagtatcattcatgtgagatatttaacaacttaagtagcctag |
149 |
Q |
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|||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| || | ||||| || |
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| T |
8278047 |
gagcagaggttaattagttacttaaa-gataagaaattatttcacaggatttatgtagagtatcattcatgtgagatatttaacaattttattagccaag |
8278145 |
T |
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| Q |
150 |
aagaaaatataataataacagtcctagtaccttggcattatgacattagccaaattcatgatgcctaatttgttgatgatgtccat |
235 |
Q |
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|||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||| ||||||||| |||||||| ||||| |
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| T |
8278146 |
aagaaaatataataataatagtcctagtaccttggtattatcacattagccaaattcatgaggcctaatttattgatgatttccat |
8278231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 235
Target Start/End: Complemental strand, 12174 - 12115
Alignment:
| Q |
176 |
gtaccttggcattatgacattagccaaattcatgatgcctaatttgttgatgatgtccat |
235 |
Q |
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| T |
12174 |
gtaccttgctattatgacattagccagattcatggagcctaatttgtttatgatttccat |
12115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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